Using a highly sensitive analytical method and careful attention to the possibility of contamination, we have measured hydrogen gas in the waters of a coastal anoxic salt pond and of the Cariaco Trench. Hydrogen concentrations in the anoxic portion of the coastal pond ranged from 0.4 to 3.5 nM and showed strong diel variations (factor of 2-4 at a single depth over 24 h) just below the anoxic interface; no diel variations were seen near the bottom. Concentrations also varied systematically with depth (factor of 6) and from day to day at a single depth (factor of 2). Uptake experiments designed to evaluate the importance of light and sulfate reduction to hydrogen cycling indicated that hydrogen consumption is not light-dependent either just below the anoxic interface (3.5 m) or near the bottom of the pond (4.5 m), and addition of 20 mM NaMoO, (an inhibitor of sulfate reduction) decreased hydrogen consumption at 4.5 m but not at 3.5 m. Because hydrogen uptake was independent of light, we suggest that diel variations in hydrogen concentration may be due to production of hydrogen in dark reactions by photosynthetic sulfur bacteria rather than to variations in uptake. In the Cariaco Trench hydrogen concentrations were uniform at about 0.2 nM throughout the anoxic portions of the basin. However, there was an indication of a maximum (0.4 nM) just below the anoxic interface, perhaps due to a greater supply of labile organic compounds to the fermentative bacteria at these depths or to physiological differences in bacteria with depth.