Botulinum neurotoxin (BoNT; serotypes A-G) and tetanus neurotoxin elicit flaccid and spastic paralysis, respectively. These neurotoxins are zinc proteases that cleave SNARE proteins to inhibit synaptic vesicle fusion to the plasma membrane. Although BoNT/B and tetanus neurotoxin (TeNT) cleave VAMP-2 at the same scissile bond, their mechanism(s) of VAMP-2 recognition is not clear. Mapping experiments showed that residues 60 -87 of VAMP-2 were sufficient for efficient cleavage by BoNT/B and that residues 40 -87 of VAMP-2 were sufficient for efficient TeNT cleavage. Alanine-scanning mutagenesis and kinetic analysis identified three regions within VAMP-2 that were recognized by BoNT/B and TeNT: residues adjacent to the site of scissile bond cleavage (cleavage region) and residues located within N-terminal and C-terminal regions relative to the cleavage region. Analysis of residues within the cleavage region showed that mutations at the P7, P4, P2, and P1 residues of VAMP-2 had the greatest inhibition of LC/B cleavage (>32-fold), whereas mutations at P7, P4, P1, and P2 residues of VAMP-2 had the greatest inhibition of LC/TeNT cleavage (>64-fold). Residues within the cleavage region influenced catalysis, whereas residues N-terminal and C-terminal to the cleavage region influenced binding affinity. Thus, BoNT/B and TeNT possess similar organization but have unique residues to recognize and cleave VAMP-2. These studies provide new insights into how the clostridial neurotoxins recognize their substrates.The botulinum neurotoxins (BoNTs) 2 are the most potent protein toxins for humans (1). BoNTs have been used for malicious purposes (2) but also relieve numerous human neurological afflictions, such as blepharospasm, in addition to being used for cosmetic enhancement (3-5). Recent studies provide a more detailed understanding of BoNT action, which should provide insight for developing novel products and therapies to treat human suffering.BoNTs are zinc proteases that cleave SNARE proteins to block synaptic vesicle fusion and neurotransmitter release to elicit flaccid paralysis. BoNTs are 150-kDa dichain proteins with AB structure-function properties; the N terminus encodes the zinc protease domain (light chain (LC)), and the C terminus encodes a translocation domain and a receptor binding domain (6, 7). The seven serotypes of BoNTs, termed A-G, are based upon antisera neutralization properties (8). Each BoNT serotype cleaves one of three neuronal SNARE proteins: SNAP-25, VAMP-2, or syntaxin 1a, except for BoNT/C, which cleaves both SNAP-25 and syntaxin 1a. BoNT/A and BoNT/E cleave SNAP-25 at different sites, whereas BoNT/B, BoNT/D, BoNT/F, and BoNT/G cleave VAMP-2 at distinct sites (9 -12). In addition, tetanus neurotoxin (TeNT) shares structural homology with the BoNTs and cleaves VAMP-2 at the same site as BoNT/B. Despite this similarity, TeNT elicits spastic paralysis due to the ability to retrograde traffic within the peripheral neurons to target interneurons (6, 13-15).Unlike other zinc proteases, BoNTs and TeNT rec...