SummaryMultiple sclerosis (MS) is a neuroinflammatory and autoimmune disease, in which various immune cell types and autoreactive T cells exert a pathogenic activity. This disease is also associated with increased transcription of several endogenous retroviruses (HERVs) normally kept in check by heterochromatin. Here, we have uncovered an organic pollutant dieldrin that activates several HERVs associated with MS and allowing us to examine the mechanism of their activation. Dieldrin singles out by its ability to simultaneously activate the MAP kinase and the PI3K pathways, while also triggering calcium dependent peptidylarginine deiminase activity. It was this association of pathways that caused HERV activation, a phenomenon that was only part of more generally increased transcription of heterochromatic regions. The HERV transcripts were generally not polyadenylated. Some arose as a consequence of activation of HERV-based enhancers, while others were the result of unusually strong activation at some mostly transcription factor genes causing transcription to leak out of the HERV-free region that surrounds them. Altogether, our data emphasized the hazard associated with simultaneous activation of multiples signaling pathways by xenobiotics, while also providing a very general toolbox for the interpretation of HERV transcription.not peer-reviewed) is the author/funder. All rights reserved. No reuse allowed without permission.The copyright holder for this preprint (which was . http://dx.doi.org/10.1101/284695 doi: bioRxiv preprint first posted online Mar. 19, 2018; 2 Introduction Human endogenous retroviruses (HERVs) are vestiges of ancient retroviral infections of the germline. They are present in many more-or-less degenerated copies, classified in families depending on the tRNA used by the original retroviruses to prime the retrotranscription (H for histidine, W for tryptophane, etc.). Together, they represent between 5 and 15% of the human genome. Recently, HERVs have received much attention as next generation sequencing and CRISPR-Cas9 technology have provided evidence for a role of these sequences, together with other potentially transposable element (TE) such as LINEs and Alu sequences, in shaping transcriptional networks. Indeed, TEs are rich in regulatory elements initially necessary for the viral cycle and later possibly co-opted by the host, mostly in the context of immunity and antiviral defense.Historically, HERVs have been also studied for their possible role in the onset of diseases. In particular, several autoimmune diseases including multiple sclerosis, type 1 diabetes mellitus, and rheumatoid arthritis have been associated with increased HERV activity, presence of virus-like particles in the blood, and production of antibodies against HERVencoded proteins (Christensen 2010;Antony et al. 2011). While the role of these HERVs in the onset of autoimmune diseases has been extensively investigated, the mechanisms at the root of their increased transcription in the patients remain essentially unexplored....