We have synthesized and characterized
two small libraries of 2-OMe
or 2-NO2-benzene analogues 2a–i and 3a–i containing a wide
variety of leaving groups. Irradiation of these compounds at 350 nm
generated benzyl radicals that were spontaneously oxidized to benzyl
cations directly producing DNA interstrand cross-links (ICLs). Compounds
with a 2-methoxy substituent showed a faster cross-linking reaction
rate and higher ICL efficiency than the corresponding 2-nitro analogues.
Apart from the aromatic substituent, the benzylic leaving groups greatly
affected DNA cross-linking efficiency. Higher ICL yields were observed
for compounds with OCH3 (3b), OCH2Ph (3d), or Ph3P+ (3i) as leaving groups than those containing OAc (3a),
NMe2 (3e), morpholine (3f), OCH2CHCH2 (3c), SPh (3g), or SePh (3h). The heat stability study of the isolated
ICL products indicated that dGs were the preferred alkylation sites
in DNA for the benzyl cations produced from 2a–i, 3c, and 3e–i while 3a (L = OAc), 3b (L = OMe), and 3d (L = OCH2Ph) showed a similar photoreactivity toward
dGs and dAs. Although the photogenerated benzyl cations alkylated
dG, dC, and dA, ICL assay with variation of DNA sequences showed that
the ICL reaction occurred with opposing dG/dC but not with staggered
dA/dA.