A method has been devised which allowed the isolation of highly purified reaction center from the thermophilic green bacterium, Chlorojlexus aurantiacus. The procedure consisted of three chromatography steps. The final step was fast protein liquid chromatography on Mono Q in the presence of nonanoyl-N-methylglucamide (Mega-9). The purified reaction center complex was photochemically active and had an A280/A813 of 1.4 or less. Under non-denaturing conditions, a pigmented protein band having a M , of 52000 -55000 was observed in sodium dodecyl sulfate gels. When the isolated complex was heat-dissociated in the presence of sodium dodecyl sulfate, just two polypeptides having very similar M , (24000 and 24500) were observed. Two protein bands were also observed in two-dimensional isoelectric focusing/sodium-dodecyl-sulfate polyacrylamide gel electropheresis ; the PI values of the two polypeptides were 6.5 and 6.7. Partial peptide mapping of the two isolated subunits, using both enzymatic and chemical cleavage techniques, yielded almost identical patterns which indicated a high degree of sequence homology between the two polypeptides.The N-terminal amino acid sequences of the two polypeptides were identical and did not exhibit any homology to reaction center subunits of purple sulfur bacteria.The Chlorojlexus reaction center is believed to be composed of one molecule of each polypeptide, the photoactive bacteriochlorophyll a dimer and, as accessory pigments, an additional bacteriochlorophyll a and three bacteriopheophytins. Hence, it appears to be the smallest photochemically active reaction center isolated to date.The first steps of photosynthesis, the conversion of light energy into chemical energy, occours within pigment-protein complexes called reaction centers. The reaction center of several photosynthetic bacteria, primarily belonging to the family Rhodospirillaceae, have been isolated and biochemically characterized. Most reaction center complexes are comprised of three polypeptides having apparent M , = 28 000, 24000 and 21 000 as determined by NaDodS0,-PAGE. The polypeptides are present in the complex in a 1 : 1 : 1 molar stoichiometry. The reaction center from Rps. viridis contains an additional four heme cytochrome subunits ( M , 40000). Non-covalently bound to the protein moiety are four bacteriochlorophylls, two bacteriopheophytins, one to two quinones and non-heme iron (for reviews, see [I, 21). The recent success in crystallizing reaction center from Rps. viridis and the subsequent X-ray diffraction analysis has led to a three-dimensional molecular model of this pigment-protein [3, 41. Extensive optical and time-resolved spectroscopical analyses have revealed the primary photochemical electron-transfer steps in isolated reaction centers. While there is general agreement on the 'late' photochemical processes (> lo-" s), there are conflicting data on the late femtoseconds to early picoseconds events [5 -1 I].The subcellular organization and location of the components of the photosynthetic apparatus and t...