In this study, a respiration-deficient Chinese hamster cell line with a defect in succinate dehydrogenase activity is shown to result from a single base change in a codon in the coding sequence for the membrane anchor protein C II-3 (also referred to as QPs-1). A premature translation stop results in the truncation of 33 amino acids from the C terminus. Bovine cDNA encoding this peptide complements the mutation. There is about 82% identity between these two mammalian proteins. The gene for C II-3 was mapped on human chromosome 1, and because it is also found on minichromosomes characterized by our laboratory, we can localize it on the short arm within 1-2 megabases from the centromere.A series of respiration-deficient Chinese hamster cell mutants isolated by our laboratory can grow normally in tissue culture as long as an adequate supply of glucose is available for glycolysis (1-3). Depletion of glucose leads to rapid cessation of growth and cell death. The mutants were grouped into seven complementation groups by somatic cell fusions (1), and one, represented by mutant CCL16-B9, was characterized to be almost completely deficient in succinate dehydrogenase activity (SDH) 1 (4,5). This enzyme, which links the reactions of the Krebs cycle to the electron transport chain, is part of a complex of four polypeptides (complex II) in the inner mitochondrial membrane. The active site for the substrate is on the flavoprotein (Fp, 70 kDa), while the iron-sulfur protein (Ip, 27 kDa) is believed to link it to two small integral membrane proteins (C II-3 and C II-4 , 15 and 7-9 kDa, respectively). A b-type heme group is associated with the membrane proteins. Electrons from the oxidation of the substrate in the mitochondrial matrix pass from the Fp via three non-heme iron-sulfur centers in the Ip , , ) to the integral membrane proteins and from there to ubiquinone. The function of the heme group associated with the membrane proteins is not completely clear (see Refs. 6 -9 for reviews).All four peptides are encoded by nuclear genes in eukaryotic organisms. Thus, the precursor polypeptides are synthesized in the cytosol and subsequently or concurrently imported into mitochondria. Following processing to their mature forms, the biogenesis of a functional complex II requires covalent attachment of flavin to the largest subunit (Fp) (10), formation of the three non-heme iron-sulfur clusters in the Ip subunit, and assembly of the heme with the membrane anchor proteins. Although this complex is the smallest and least intricate of the electron transport complexes in the inner mitochondrial membrane, much remains to be learned about the mechanism or pathway of its assembly.With the Fp-Ip complex dissociated from the membrane by chaotropic ions, SDH activity can be assayed with artificial electron acceptors such as tetrazolium ions, phenazine methosulfate and dichlorophenol-indophenol, or ferricyanide. Based on the absence of activity in the mutant CCL16-B9, we hypothesized that the defective protein was either the Ip or the Fp subun...