Maintaining electron flow through the photosynthetic apparatus, even in the absence of a sufficient amount of NADP ؉ as an electron acceptor, is essential for chloroplast protection from photooxidative stress. At least two different pathways are thought to participate in this process, i.e. cyclic electron flow and the water-water cycle. Although the function of the water-water cycle was inferred from a number of biochemical and physiological studies, genetic evidence for the function of this cycle is very limited. Here we show that knockdown Arabidopsis plants with suppressed expression of the key water-water cycle enzyme, thylakoid-attached copper/zinc superoxide dismutase (KD-SOD), are suppressed in their growth and development. Chloroplast size, chlorophyll content, and photosynthetic activity were also reduced in KD-SOD plants. Microarray analysis of KD-SOD plants, grown under controlled conditions, revealed changes in transcript expression consistent with an acclimation response to light stress. Although a number of transcripts involved in the defense of plants from oxidative stress were induced in KD-SOD plants, and seedlings of KD-SOD plants were more tolerant to oxidative stress, these mechanisms were unable to compensate for the suppression of the water-water cycle in mature leaves. Thus, the localization of copper/zinc superoxide dismutase at the vicinity of photosystem I may be essential for its function. Our studies provide genetic evidence for the importance of the water-water cycle in protecting the photosynthetic apparatus of higher plants from photooxidative damage.Dissipation of excess energy absorbed by the photosynthetic apparatus is a fundamental process essential for the survival of almost all photosynthetic organisms. It prevents photooxidative damage that occurs when excited chlorophyll molecules improperly transfer their higher energy state to oxygen or neighboring molecules and convert them into reactive molecules or toxic radicals (1-3). This process is especially crucial when CO 2 fixation is limited because of environmental conditions such as cold or drought. Under these conditions, the energy absorbed by the photosynthetic apparatus cannot be channeled into the reduction of CO 2 , and photooxidative damage may occur (4). Maintaining electron flow through the photosynthetic membrane, even under stressful conditions, is therefore vital for preventing damage to plant cells (2). A number of different pathways are thought to cooperate in protecting the photosynthetic apparatus from photooxidative stress. These include the zeaxanthin cycle that directly protects the antenna molecules and the cyclic electron flow and the waterwater cycle that shunt electrons through the photosynthetic apparatus and maintain the pH gradient in the chloroplast, which is essential for the function of the zeaxanthin cycle (1, 2).The water-water cycle channels electrons obtained from the splitting of water molecules at photosystem II (PSII) 1 through the photosynthetic apparatus. These electrons are transferred ...