The ecological integrity of freshwater ecosystems is regularly examined through assessment of their macroinvertebrate assemblages. The various methods used in such biomonitoring all have one characteristic in commonthe neglect of water mites. Even though this group perfectly fulfills all necessary requisites for successful bioindicators, these invertebrates are either completely ignored or lumped together as-Acari‖. This study, for the first time, uses water mites (Hydrachnidia) as bioindicators in the Neotropics to compare the anthropogenic stress in 15 streams at three different levels of contamination (pristine, rural, urban). In total, 4371 water mite specimens, belonging to 31 genera and 14 families, were collected. Diversity, abundance, and richness of water mite assemblages were significantly reduced with increasing levels of contamination. These differences were clearest in the dry season. Atractidella turned out to be, by far, the most tolerant water mite genus, having the greatest abundance at the most contaminated sites. In contrast, Pseudotorrenticola was found only in pristine waters, while Hydrodroma, Limnesia, Koenikea, Torrenticola, Monatractides and the family Aturidae showed clear preferences for pristine waters.