Function of the maize (Zea mays) gene sugary1 (su1) is required for normal starch biosynthesis in endosperm. Homozygous su1-mutant endosperms accumulate a highly branched polysaccharide, phytoglycogen, at the expense of the normal branched component of starch, amylopectin. These data suggest that both branched polysaccharides share a common precursor, and that the product of the su1 gene, designated SU1, participates in kernel starch biosynthesis. SU1 is similar in sequence to ␣-(136) glucan hydrolases (starch-debranching enzymes [DBEs]). Specific antibodies were produced and used to demonstrate that SU1 is a 79-kD protein that accumulates in endosperm coincident with the time of starch biosynthesis. Nearly full-length SU1 was expressed in Escherichia coli and purified to apparent homogeneity. Two biochemical assays confirmed that SU1 hydrolyzes ␣-(136) linkages in branched polysaccharides. Determination of the specific activity of SU1 toward various substrates enabled its classification as an isoamylase. Previous studies had shown, however, that su1-mutant endosperms are deficient in a different type of DBE, a pullulanase (or R enzyme). Immunoblot analyses revealed that both SU1 and a protein detected by antibodies specific for the rice (Oryza sativa) R enzyme are missing from su1-mutant kernels. These data support the hypothesis that DBEs are directly involved in starch biosynthesis.Starch is a reserve carbohydrate that accumulates in the storage organs of many higher plants. This storage compound consists of a mixture of two Glc homopolymers, amylopectin and amylose, in which linear chains are formed via ␣-(13 4) glucosyl linkages and branches are introduced by ␣-(13 6) glucosyl linkages. Starch synthesis in maize (Zea mays) occurs within the amyloplasts of endosperm cells during kernel development via the concerted actions of ADP-Glc pyrophosphorylase, starch synthases, and starch-branching enzymes (for reviews, see Preiss, 1991;Hannah et al., 1993;Martin and Smith, 1995;Nelson and Pan, 1995; Preiss and Sivak, 1996; Smith et al., 1996). In addition, selective removal of branch linkages by DBEs is proposed to play an essential role in the final determination of amylopectin structure (Ball et al., 1996).Physical and chemical analyses of granular starch have led to a widely accepted model for amylopectin structure called the "cluster model," in which amorphous and crystalline regions alternate with a defined periodicity (for reviews, see French, 1984;Manners, 1989;Jenkins et al., 1993). Within amylopectin the crystalline component is composed of parallel arrays of linear chains packed tightly in double helices. Branch linkages, which account for approximately 5% of the glucosyl linkages in amylopectin, are located at the root of each cluster in the amorphous region. This periodic clustering of branches allows for the alignment of the intervening linear chains and their dense packing into crystalline regions, thus providing an efficient mechanism for nutrient storage. Undoubtedly, the enzymatic processes requir...