The T-cell-activating protein TAP is a murine phosphatidylinositol-anchored glycoprotein whose expression is controlled by the Ly-6 locus. Previous studies have suggested an important role for this protein in physiological T-cell activation. Using oligonucleotide probes, we have now isolated a cDNA clone whose predicted sequence would encode a protein with an NH2-terminal sequence identical to that of the TAP molecule. Further analysis of the predicted protein sequence revealed a cysteine-rich protein with a hydrophobic domain at the COOH terminus and without N-linked glycosylation sites-all features consistent with our previous analysis of the TAP protein. In Southern blot analysis, the Ly-6.2 cDNA clone detects a multigene family and a restriction fragment length polymorphism that maps precisely to the Ly-6 locus. Expression of the cDNA clone in COS cells demonstrates that it codes for TAP and clarifies the relationship between the epitopes recognized by various aLy-6 monoclonal antibodies.Finally, we have studied the expression of Ly-6 mRNA in a variety of cell lineages. Ly-6 transcripts were detected in all organs examined, including spleen, kidney, lung, brain, and heart. This demonstrates that the Ly-6 locus is transcriptionally active in a wide range of organs and suggests that the role of TAP or TAP-like proteins might extend to other tissues.Activation of T inducer cells is antigen-dependent and major histocompatibility complex (MHC)-restricted (1). The specificity of activation is imparted by a clonotypic receptor, composed of two variable protein chains, Ti a and ,B (2, 3). Cell-surface expression of the T-cell receptor (TCR) has been extensively characterized. It requires coexpression of a set of nonpolymorphic proteins, termed T3, which are physically associated with the antigen receptor (4, 5). In contrast, the molecular mechanisms of signal transduction after TCR triggering is not understood.Recent findings by our laboratory have raised the possibility that the T-cell-activating protein (TAP) (6), a phosphatidylinositol-anchored, murine glycoprotein (7), is involved in this process: First, antibodies against TAP can induce T-cell proliferation and can augment stimulation of the TCR (6). Second, TAP is expressed on virtually all L3T4+ peripheral T cells, and in the thymus, TAP expression defines the immunocompetent compartment (8-10). Finally, T-cell-T-cell (T-T) hybridoma mutants that are deficient in the expression of TAP have significant defects in their responsiveness to TCR stimulation (33).The gene encoding the TAP molecule maps to the Ly-6 locus (8). A polymorphism in the expression of TAP in inbred mouse strains, matches precisely that of the "b" haplotype of the Ly-6 locus. This locus, which consists of two haplotypes, Ly-6.J (Ly-6a) and Ly-6.2 (Ly-6b), encodes multiple lymphoid antigens (8, 11).We have previously reported the nearly complete NH2-terminal sequence of the TAP molecule (12). Based on the obtained protein sequence data, oligonucleotides were synthesized and used to sc...