Structures, Functions, and Evolutionary Histories of DNA-Binding Domains of Plant-Specific Transcription Factors

Yamasaki, Kazuhiko

doi:10.1016/b978-0-12-800854-6.00004-x

Cited by 4 publications

(3 citation statements)

References 100 publications

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“…Drought is the most significant abiotic limitation, limiting photosynthesis, glucose metabolism, and the TFs are also divided into groups according to the structure of their DNA-binding domains (Gonzalez 2016). Some TF families are found in all eukaryotes, while others are only found in certain lineages (Yamasaki 2016)…”

Section: Introductionmentioning

confidence: 99%

A Review of Wrky Transcription Factors in The Regulation of Abiotic and Biotic Stress in Cotton (Gossypium Spp.)

Finsa¹

2022

TPR

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Cotton is an important economic crop that is grown in over 100 countries throughout the world. It provides the textile industry raw materials, cottonseed oil for cooking, and edible and protein-rich oil cake remnants for farm animals. Abiotic and biotic stressors limit its production, which is strongly reliant on climatic circumstances. Cotton plants have several built-in mechanisms for dealing with abiotic and biotic stress. These defense systems are controlled by changes in the expression of stress-responsive genes. Several stress response-related genes have been discovered, including WRKY transcription elements. WRKY proteins bind to the W box (TGACC (A/T)) in the promoter regions of genes to activate or reduce the expression of downstream genes, which regulates the stress response. It also works with other transcription factors to control the defense responses of the plant. The function of WRKY transcription factors in cotton was briefly discussed in this review in terms of drought, salinity, temperature, and oxidative and biotic stress reactions. In conclusion, WRKY genes are thought to be important components of gene regulatory networks involved in plant stress responses and developmental plasticity in response to seasonal variations in environmental conditions and pathogenic infections.

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Section: Introductionmentioning

confidence: 99%

A Review of Wrky Transcription Factors in The Regulation of Abiotic and Biotic Stress in Cotton (Gossypium Spp.)

Finsa¹

2022

TPR

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“…(Allen et al, 1998;código PDB 1gcc), e a estrutura do domínio B3 de RAV1 (AT1G13260) (B) com as 7 folhas β arranjadas em open barrel (em amarelo) e as duas α hélices (em vermelho) (Yamasaki et al, 2013;código PDB 1wid), ambas as estruturas estão em complexo com o DNA (em cinza). Retirado de Yamasaki (2015).…”

Section: Fatores De Transcrição Rav (Related To Abi3/vp1)unclassified

Predição in silico do papel de ScRAV1 sobre os genes de parede celular e fatores de transcrição durante a formação do aerênquima na raiz de cana-de-açúcar

Ferreira¹

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“…The TF that share the B3 domain include auxin response factors (ARF), LEAFY COTYLEDON2-ABI3-VAL (LAV), cold-responsive transcription factor RAV1, and REPRODUCTIVE MERISTEM (REM) families. The function of ARF and LAV families are linked to phytohormones, auxin and abscisic acid responsible for controlling development of various organs, and regulating seed maturation/germination respectively, in addition to being lined to stress response and vernalization [96,97]. Sequence data of Glyma.06G220000 shows several NVs, including 2 SNPs in the exon region, resulting in a change from (valine > phenylalanine), and…”

Section: Candidate Gene Summarymentioning

confidence: 99%

A Functional Genomics Approach to Identifying Potential Candidates Underlying the E7 Maturity Locus in Soybean (Glycine max)

Pattang¹

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Soybean [Glycine max (L.) Merr.] is a valuable crop, with benefits attributed to its high protein and oil content, in addition to its nitrogen fixating capabilities. To expand production across Canada, breeding programs will need the availability of markers linked to desired traits, including time of flowering and maturity. The E7 locus is among the 10 maturity loci identified in this pathway, whose underlying gene remains unknown. Using functional genomics resources, and a computational approach utilizing PIPE (Protein-protein Interaction Prediction Engine), this region was narrowed to a short-list of candidates, including 3 promising candidates:Glyma.06G200400, Glyma.06G200800, and Glyma.06G220000. From the expression analysis performed to date, Glyma.06G199800 and Glyma.06G233300, were found to have significant change in expression between the E7/e7 lines in contrasting flowering stages during long-day (LD) photoperiod. However, additional expression analysis on the remaining candidate's, along with further experimentation needs to be performed to reveal the underlying gene for E7.

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Structures, Functions, and Evolutionary Histories of DNA-Binding Domains of Plant-Specific Transcription Factors

Cited by 4 publications

References 100 publications

A Review of Wrky Transcription Factors in The Regulation of Abiotic and Biotic Stress in Cotton (Gossypium Spp.)

A Review of Wrky Transcription Factors in The Regulation of Abiotic and Biotic Stress in Cotton (Gossypium Spp.)

Predição in silico do papel de ScRAV1 sobre os genes de parede celular e fatores de transcrição durante a formação do aerênquima na raiz de cana-de-açúcar

A Functional Genomics Approach to Identifying Potential Candidates Underlying the E7 Maturity Locus in Soybean (Glycine max)

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