1997
DOI: 10.1038/nsb1097-833
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Structure of the collagen-binding domain from a Staphylococcus aureus adhesin

Abstract: The crystal structure of the recombinant 19,000 M(r) binding domain from the Staphylococcus aureus collagen adhesin has been determined at 2 A resolution. The domain fold is a jelly-roll, composed of two antiparallel beta-sheets and two short alpha-helices. Triple-helical collagen model probes were used in a systematic docking search to identify the collagen-binding site. A groove on beta-sheet I exhibited the best surface complementarity to the collagen probes. This site partially overlaps with the peptide se… Show more

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Cited by 140 publications
(155 citation statements)
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“…A distinctive feature of the N-domain is the presence of 2 helices between strands B and C that partially cover one side of the core, whereas the C-domain uniquely contains an elongated ␤-ribbon, formed by strands S and T, running toward the M-domain. In contrast, the M-domain of SpaA has the CnaA fold, first seen in the N2 domain of S. aureus CnaA (14). This comprises 9 ␤-strands that form a partially open ␤-barrel.…”
Section: Resultsmentioning
confidence: 99%
“…A distinctive feature of the N-domain is the presence of 2 helices between strands B and C that partially cover one side of the core, whereas the C-domain uniquely contains an elongated ␤-ribbon, formed by strands S and T, running toward the M-domain. In contrast, the M-domain of SpaA has the CnaA fold, first seen in the N2 domain of S. aureus CnaA (14). This comprises 9 ␤-strands that form a partially open ␤-barrel.…”
Section: Resultsmentioning
confidence: 99%
“…Further computational analyses were carried out to investigate the possible function of this domain using the Profunc server, also available at the European Bioinformatics Institute; this is a program developed to help assign a likely biochemical function of a protein based on its 3D structure. Interestingly, the highest score was observed for a collagen binding domain from a Staphylococcus aureus adhesin (PDB code 1amx) (33), with which the N2 domain exhibits 26.4% primary sequence identity; structure superimposition gave an RMSD of 1.7 Å (covering 55 out of the 84 residues). Such structural identity occurs between four ␤-strands of the N2 domain (␤1, ␤2, ␤4, and ␤5) that together comprise one ␤-sheet of the ␤-barrel (see Fig.…”
Section: Resultsmentioning
confidence: 99%
“…1). Recently, we determined the crystal structure of CBD19, which represents the smallest sub-fragment of the A domain with measurable collagenbinding activity (Symersky et al, 1997). Biochemical studies of the repeats of the B domain are in progress.…”
Section: Introductionmentioning
confidence: 99%