2015
DOI: 10.7150/thno.12398
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Structure-based Design of Peptides with High Affinity and Specificity to HER2 Positive Tumors

Abstract: To identify peptides with high affinity and specificity against human epidermal growth factor receptor 2 (HER2), a series of peptides were designed based on the structure of HER2 and its Z(HER2:342) affibody. By using a combination protocol of molecular dynamics modeling, MM/GBSA binding free energy calculations, and binding free energy decomposition analysis, two novel peptides with 27 residues, pep27 and pep27-24M, were successfully obtained. Immunocytochemistry and flow cytometry analysis verified that both… Show more

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Cited by 35 publications
(34 citation statements)
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“…13 In mouse models we have shown that the efficacy for the treatment of human HER2-positive breast cancer with free trastuzumab alone could be significantly increased when the antibody was co-liganded with poly(β-Lrange-malic acid and an antisense oligonucleotide (AON) targeting HER2-mRNA. 4,5 After the successful use of trastuzumab with affinity in the low nanomolar range, 6,7 peptides with affinities in the high nanomolar region 79 and affibodies with affinities in the picomolar to low nanomolar regions have been developed and successfully used for tumor imaging. 10,11 Examples of targeted therapy using anti-HER2/neu peptide (AHNP) or affibodies alone or in combination with other molecules have demonstrated variable degrees of tumor-specific growth inhibition.…”
Section: Introductionmentioning
confidence: 99%
“…13 In mouse models we have shown that the efficacy for the treatment of human HER2-positive breast cancer with free trastuzumab alone could be significantly increased when the antibody was co-liganded with poly(β-Lrange-malic acid and an antisense oligonucleotide (AON) targeting HER2-mRNA. 4,5 After the successful use of trastuzumab with affinity in the low nanomolar range, 6,7 peptides with affinities in the high nanomolar region 79 and affibodies with affinities in the picomolar to low nanomolar regions have been developed and successfully used for tumor imaging. 10,11 Examples of targeted therapy using anti-HER2/neu peptide (AHNP) or affibodies alone or in combination with other molecules have demonstrated variable degrees of tumor-specific growth inhibition.…”
Section: Introductionmentioning
confidence: 99%
“…The comparison revealed a certain resemblance with the Affibody at the region starting from lysine at position 27 (KRAFIRSLYDDPS vs. KAAYSLGYYNPT). In addition, this region in the Affibody molecule contains key residues for HER2 binding [15,44]. Hence, the exact interaction domain between HER2 and cP(AA)_(YY) and a possible overlapping with the Affibody binding site need to be determined by structural studies of the complex.…”
Section: Discussionmentioning
confidence: 99%
“…In the last decade, several HER2-targeted peptides have been identified and evaluated for applications in tumor inhibition or drug delivery (37)(38)(39)(40), and some specific agents have been used in NIRF imaging (41,42). However, little research on peptide-based nuclear imaging of HER2 has been reported.…”
Section: Discussionmentioning
confidence: 99%