Neuroligins (NLs) are postsynaptic cell-adhesion molecules that are implicated in humans in autism spectrum disorders because the genes encoding NL3 and NL4 are mutated in rare cases of familial autism. NLs are highly conserved evolutionarily, except that no NL4 was detected in the currently available mouse genome sequence assemblies. We now demonstrate that mice express a distant NL4 variant that rapidly evolved from other mammalian NL4 genes and that exhibits sequence variations even between different mouse strains. Despite its divergence, mouse NL4 binds neurexins and is transported into dendritic spines, suggesting that the core properties of NLs are retained in this divergent NL isoform. The selectively rapid evolution of NL4 in mice suggests that its function in the brain is under less stringent control than that of other NLs, shedding light on why its mutation in autism spectrum disorder patients is not lethal, but instead leads to a discrete developmental brain disorder.autism ͉ cell-adhesion molecule ͉ neurexin ͉ synapse N euroligins (NLs) are postsynaptic cell-adhesion molecules that were discovered as ligands (or receptors, depending on the perspective) for neurexins (1, 2). Neurexins, in turn, are a family of neuronal cell-adhesion molecules that were identified as receptors for the presynaptic neurotoxin ␣-latrotoxin (3). Neurexins and NLs form a high-affinity complex with each other that is regulated by alternative splicing of both proteins and that mediates intercellular adhesion (4). When nonneuronal cells expressing NLs or neurexins are cocultured with neurons, the NLs and neurexins on the nonneuronal cells potently induce formation of pre-or postsynaptic specializations, respectively, in the cocultured neurons (5-7). These results indicate that NLs and neurexins form a transsynaptic junction with each other and that the formation of this junction is sufficient to signal to the neuron what kind of synaptic specialization to elaborate. Thus, neurexins and NLs probably function either in the initial establishment of synaptic junctions or in the validation of transient junctions formed by other mechanisms. Indeed, knockout experiments revealed that NLs and neurexins are not essential for the establishment of synapses but are required for the functionality of synapses, confirming the second hypothesis (8, 9).Humans express five NLs from two autosomal genes (NL1 and NL2), two X-chromosomal genes (NL3 and NL4), and one Ychromosomal gene (NL5; 10). NL1, NL2, and NL3 are highly conserved in rodents, but no homologs of NL4 and NL5 were identified. Different NLs appear to be specialized for distinct functions, as evidenced by the distinct properties of NL1 and NL2. NL1 is preferentially localized to excitatory synapses (11), selectively increases excitatory synaptic strength when overexpressed (12), and causes an excitatory synapse deficit when deleted (12). NL2, in contrast, is preferentially localized to inhibitory synapses (6, 13), selectively increases inhibitory synaptic strength when overexpressed (...