Background: The relationship between the ratio of monocytes to apolipoprotein A1 (MAR) and the long-term prognosis of patients with coronary artery disease (CAD) after PCI has not been investigated. Methods: A total of 5678 patients with CAD after PCI were recruited for the present study from the First Affiliated Hospital of Xinjiang Medical University. The patients were divided into 3 groups according to the MAR tertiles: lower group (MAR<0.34, n=1881), medium group (0.34≤MAR<0.50, n=1859), and higher group (MAR≥0.50, n=1938). The primary endpoint was long-term mortality, including all-cause death (ACM) and cardiac death (CM). The mean follow-up time was 35.9 ± 22.6 months. Results: There were 78 (4.1%) deaths in the lower group, 90 (4.8%) deaths in the medium group, and 125 (6.4%) deaths in the higher group. The difference was significant (P=0.004). We also found significant differences among these three groups in the incidence of CM (P=0.012), MACE (P=0.008), and MACCE (P=0.012). Using 0.535 as an optimal cutoff value, we found that patients with MARs ≥0.535 had 40.5% and 39.9% increased risks of ACM and CM, respectively, compared to patients with an MAR<0.535. The differences remained significant after adjustment for confounders (ACM, HR=1.447, 95%CI: 1.139-1.838, P=0.003; CM, HR=1.424, 95%CI: 1.089-1.862, P=0.010). Conclusion: This study demonstrated that the baseline MAR was an independent predictor of long-term mortality in CAD patients who underwent PCI.