“…However, certain limitations are important when interpreting results from cultured podocyte cell lines: immortalized podocytes are usually cultivated in petri dishes as single cells and not in a 3-dimensional space with mesangial and endothelial cells in proximity. Moreover, podocytes in culture do not commonly face the mechanical stretch and the flow of primary urine filtrate as podocytes in vivo (6). In culture, podocytes do not form secondary processes with slit diaphragms in between neighboring ABBREVIATIONS: 2D, 2-dimensional; ACTN4, a-actinin-4; ANLN, anillin; ARHGDIA, r-GDP-dissociation inhibitor a; BM, basement membrane; BNIP3, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; BNIP3L, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like; BSA, bovine serum albumin; CBX1, chromobox protein homolog 1; CD2AP, CD2-associated protein; CD80, T lymphocyte-activation antigen CD80; CHX, cycloheximide; CNN1, calponin-1; COBLL1, cordon-bleu protein-like 1; CTSD, cathepsin D; DAPK1/3, death-associated protein kinase 1; DAPK3, death-associated protein kinase 3; DQ-BSA, dequenched bovine serum albumin; ER, endoplasmic reticulum; ESI, electrospray ionization; FA, formic acid; F-actin, filamentous actin; FBS, fetal bovine serum; FDR, false-discovery rate; FPKM, fragments per kilobase million; FSGS, focal segmental glomerulosclerosis; GO, gene ontology; GO-CC, gene ontology cellular component; GSN, gelsolin; iBAQ, intensity-based absolute quantification; ITGA3, integrin a-3; LAMB2, laminin subunit b-2; LAMP1/2, lysosomal-associated membrane protein 1/2; LFQ, label-free quantification; LMNA, lamin A/C; MS/MS, tandem mass spectrometry; MYH9, myosin-9; NCK1/2, cytoplasmic protein NCK1/2; nLC, nano liquid chromatography; pSILAC, pulsed stable isotope labeling by amino acids in cell culture; PSM, peptide spectrum match; RBBP4, retinoblastoma-binding protein 4; RPMI, Roswell Park Memorial Institute; SYNPO, synaptopodin; t 1/2 , half-life; TRPC6, short transient receptor potential cation channel 6; WT1, Wilms tumor protein 1 cells.…”