32 We describe construction and phenotypic analysis of a human embryonic stem cell model of 33 progressive A-dependent neurodegeneration (ND) with potential relevance to Alzheimer's 34 disease (AD). We modified one allele of the normal APP locus to directly express a secretory 35 form of A40 or A42, eliminating the need for amyloidogenic APP proteolysis. Following 36 neuronal differentiation edited cell lines specifically accumulate aggregated/oligomeric A, 37 exhibit a synaptic deficit and have an abnormal accumulation of endolysosomal vesicles. Edited 38 cultures progress to a stage of overt ND. All phenotypes appear at earlier culture times for A42 39 relative to A40. Whole transcriptome RNA-Seq analysis identified 23 up and 70 down 40 regulated genes (DEGs) with similar directional fold change but larger absolute values in the 41 A42 samples suggesting common underlying pathogenic mechanisms. Pathway/annotation 42 analysis suggested that down regulation of extracellular matrix and cilia functions are 43 significantly overrepresented. This cellular model could be useful for uncovering mechanisms 44 directly linking A to neuronal death and as a tool to screen for new therapeutic agents that slow 45 or prevent human ND.
Introduction47 Alzheimer's disease (AD) is a chronic progressive neurodegenerative disorder with a decade's 48 long preclinical phase. Clinical features include memory loss accompanied by progressive 49 cognitive dysfunction, cortical atrophy and ultimately death. Neuropathology is well defined by 50 a widespread accumulation of two prominent lesions in cortical brain regions: amyloid plaques 51 and neurofibrillary tangles. Plaques are composed primarily of higher-ordered aggregates of 52 small A peptides derived from amyloidogenic proteolysis of a large transmembrane amyloid 53 precursor protein (APP). Tangles are composed largely of hyperphosphorylated aggregates of a 54 microtubule stabilizing protein tau, a product of the MAPT gene. All forms of AD exhibit 55 accumulation of both A plaques and neurofibrillary tangles and both are considered necessary 56 for a definitive postmortem diagnosis [1]. Both plaque and tangle neuropathology correlate with 57 decrements in cognitive function in AD, but our mechanistic understanding of how these lesions 58 contribute to progressive neurodegeneration (ND) is still incomplete [2]. The reasons for this 59 include the inherent complexity of the disease as well as inadequacies of current animal and 60 cellular experimental models. 61 There are two general forms of AD: a rare autosomal dominant familial form (FAD) and the 62 more prevalent sporadic form (SAD). Both FAD and SAD have a complex genetic component 63 (i.e. >20 identified risk alleles with APOE4 being the most prominent), significant life-style 64 associations (obesity, sleep, exercise, etc.), several associated co-morbidities (i.e. diabetes, head 65 trauma), and of course the most important correlate of all, old age. This complexity coupled with 66 the lengthy time course of the disea...