EXECUTIVE SUMMARYIn fiscal year 1999, we collected nonlethal fin tissues for genetic analysis from nineteen stream trout populations (fifteen initially expected to be cutthroat populations and four initially expected to be interior rainbow populations) residing in headwater tributaries of the Pend Oreille River, Kettle River, Sanpoil River, and Sherman Creek basins, all on federal lands of the Colville National Forest in northeastern Washington. Using a portable aquarium, we also photographed representative specimens of each population for a color catalog of appearance phenotypes. Analysis of paired interspersed nuclear DNA elements (PINEs) was used to characterize each population as to subspecies and level of hybridization, and a genetic purity rating was assigned to each using a modification of the Binns system originally developed in Wyoming to gauge the genetic purity of interior cutthroat trout populations.Nine of our collection sites were free of hybrids and contained only genetically pure westslope cutthroat trout Oncorhynchus clarki lewisi. Four of these (South Fork Sanpoil, Rocky Creek, Silver Creek, and East Fork Smalle Creek) were given A-ratings for genetic purity and are considered native populations owing to the absence of any record of stocking with cutthroat trout. The other five populations were rated B because these streams had been stocked in the past with cutthroat trout. However, based on results of another recent project conducted by the Washington Department of Fish and Wildlife, we now believe that two of these populations (Upper Sullivan and North Fork Sullivan creeks) should be elevated to A-rank because they bear no genetic resemblance to the commonly used hatchery cutthroat stock.All other cutthroat trout populations contained hybrids with rainbow trout ranging from 5 percent to 63 percent of the individuals collected. Owing to a limitation of the PINE technique, we are unable to state whether the rainbow trout contribution to these hybrids was from the Columbia River redband subspecies O. mykiss gairdneri, which is the indigenous form, or from the coastal rainbow subspecies O. mykiss irideus which has been widely stocked in the basin.Three of our collection sites contained only rainbow trout and were free of evidence of hybridization with cutthroat trout. Unfortunately, we were not able to clearly distinguish between interior and coastal rainbow trout or hybrids of the two in this study. Even so, based on the absence of any record of past stocking of rainbow trout, two populations, those of Lone Ranch Creek and Canyon Creek, were given A-ratings and are taken to be pure native O. mykiss gairdneri.Brook trout Salvelinus fontinalis were found at nine of our collection sites and comprised a significant proportion (range from slightly less than 5 percent to 75 percent) of the salmonids present at these sites. We never found a site where brook trout had completely displaced either cutthroat or rainbow trout, but in one site brook trout did outnumber the cohabiting species (rainbow trout i...