Two new species and a new combination of Hypoxylon from Texas were identified and described based on morphological, multigene phylogenetic (ITS-nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2, 28S-5′ 1,200 bp of nuc 28S rDNA , RPB2-partial second largest subunit of the DNAdirected RNA polymerase II, TUB2-partial β-tubulin) and chemotaxonomic data. Hypoxylon olivaceopigmentum is characterized by its pulvinate to glomerate stromata, olivaceous KOHextractable pigments, equilateral ascospores and indehiscent perispore. Hypoxylon texense can be distinguished from morphologically similar species by its rust to dark brick KOH-extractable pigments and its stromatal secondary metabolites HPLC profile. Hypoxylon hinnuleum is proposed as the sexual morph of Nodulisporium hinnuleum featuring dark vinaceous glomerate stromata with dark brick KOH-extractable pigments composed of cohaerin-type azaphilones and smooth equilateral ascospores with indehiscent perispore. Based on this diagnostic characters H. hinnuleum forms a complex with H. croceum and H. minicroceum. More than 50 ITS sequences with high identity originating from North American and East Asian environmental isolates formed a well-supported clade with the type of N. hinnuleum demonstrating the widespread distribution of the species complex. In addition, updated descriptions and comprehensive illustrations with detailed information on the diagnostic feature of H. fendleri and H. perforatum are provided. The multi-locus phylogenetic reconstruction of Hypoxylon supported the status of the new species and broadened the knowledge about intergeneric relationships.