The function of cellular structures at the mesoscale is dependent on their geometry and proportionality to cell size. The mitotic spindle is a good example why length and shape of intracellular organelles matter. Spindle length determines the distance over which chromosomes will segregate and spindle shape ensures bipolarity. While we still lack a systematic and quantitative understanding of subcellular morphometrics, new imaging techniques and volumetric data analysis promise novel insights into scaling relations across different species. Here, we introduce Spindle3D, an open-source plug-in that allows for the quantitative, unbiased, and automated analysis of 3D fluorescent data of spindles and chromatin. We systematically analyse different cell types, including somatic cells, stem cells and one-cell embryos across different phyla to derive volumetric relations of spindle, chromatin, and cell volume. Taken together, our data indicate that mitotic spindle width is a robust indicator of spindle volume, which correlates linearly with chromatin and cell volume both within single cell types and across metazoan phyla.