Sphingobacterium bambusae sp. nov., isolated from soil of bamboo plantation

Duan, Shengwen; Liu, Zhengchu; Feng, Xiaoli; Zheng, Ke; Cheng, Lifeng

doi:10.1007/s12275-009-0296-2

Cited by 29 publications

(21 citation statements)

References 20 publications

(16 reference statements)

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“…At the time of writing, the genus encompassed the following 15 species with validly published names: Sphingobacterium multivorum, S. mizutaii and the type species S. spiritivorum (Yabuuchi et al, 1983), S. antarcticum (Shivaji et al, 1992), S. faecium and S. thalpophilum (Takeuchi & Yokota, 1992), S. daejeonense (Kim et al, 2006), S. composti T5-12 T , S. composti 4M24 T (Yoo et al, 2007), S. canadense (Mehnaz et al, 2007), S. siyangense (Liu et al, 2008), S. kitahiroshimense (Matsuyama et al, 2008), S. anhuiense (Wei et al, 2008), S. shayense (He et al, 2010) and S. bambusae (Duan et al, 2009). There are two validly named S. composti strains, described by Ten et al (2006) and by Yoo et al (2007), respectively.…”

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Sphingobacterium lactis sp. nov. and Sphingobacterium alimentarium sp. nov., isolated from raw milk and a dairy environment

Schmidt

Wenning

Scherer

2012

International Journal of Systematic and Evolutionary Microbiology

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Four non-fermenting, rod-shaped, Gram-staining-negative bacterial strains, designated WCC 4512 T , WS 4555, WCC 4521 T and WS 4556, were isolated from raw milk and the dairy environment. Phylogenetic analyses based on 16S rRNA and groEL gene sequences demonstrated the affiliation of the four strains to two distinct clusters within the class Sphingobacteriia, phylum 'Bacteroidetes'. Strains WCC 4512 T and WS 4555 showed the highest 16S rRNA gene sequence similarity to the type strain of S. daejeonense (97.3 and 97.2 %, respectively), whereas strains WCC 4521 T and WS 4556 were most closely related to S. composti LMG 23401 T (97.6 % 16S rRNA gene sequence similarity). The DNA G+C contents of strains WCC 4512 T and WCC 4521 T were 44.2 and 39.3 mol%, respectively. The major cellular fatty acids and the presence of menaquinone MK-7 as the predominant quinone for both strains WCC 4512 T and WCC 4521 T supported their affiliation to the genus Sphingobacterium. DNA-DNA hybridization experiments between strain WCC 4512 T and S. daejeonense LMG 23402 T and between strain WCC 4521 T and S. composti LMG 23401 T revealed DNA relatedness values of 2 % (repetition, 3 %) and 8 % (repetition, 17 %), respectively. On the basis of phenotypic and genetic properties, as well as phylogenetic distinctiveness, it is suggested that the four strains represent two novel Sphingobacterium species with strain WCC 4512 T (5DSM 22361 T 5LMG 25272 T ) as the type strain of Sphingobacterium lactis sp. nov. (WS 4555 is a reference strain of S. lactis) and strain WCC 4521 T (5DSM 22362 T 5LMG 25273 T ) as the type strain of Sphingobacterium alimentarium sp. nov. (WS 4556 is a reference strain of S. alimentarium).In 1983, Yabuuchi and colleagues described the genus Sphingobacterium (family Sphingobacteriaceae, order Sphingobacteriales, class Sphingobacteriia, phylum 'Bacteroidetes'; Ludwig et al., 2008), for Gram-staining-negative, nonspore-forming rods containing high quantities of sphingophospholipids in their cells (Yabuuchi et al., 1983). At the time of writing, the genus encompassed the following 15 species with validly published names: Sphingobacterium multivorum, S. mizutaii and the type species S. spiritivorum (Yabuuchi et al

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“…Hydrolysis of: 2006; Mehnaz et al, 2007;Yoo et al, 2007;Liu et al, 2008;Matsuyama et al, 2008;Wei et al, 2008;Duan et al, 2009;He et al, 2010). Respiratory quinones were analysed according to Altenburger et al (1996).…”

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confidence: 99%

Sphingobacterium lactis sp. nov. and Sphingobacterium alimentarium sp. nov., isolated from raw milk and a dairy environment

Schmidt

Wenning

Scherer

2012

International Journal of Systematic and Evolutionary Microbiology

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“…The genus Sphingomonas belongs to the class Alphaproteobacteria (Takeuchi et al, 2001;Busse et al, 2003;Li et al, 2004;Rivas et al, 2004;Kim et al, 2007).In a series of studies, we attempted to isolate microorganisms from soil to investigate community structure based on a culture-dependent method (Duan et al, 2009;Kim et al, 2009) as well as the antimicrobial activity of plants against microorganisms growing in soil and food (Moon et al, 2009). In this study, an orange-colored Sphingomonas-like strain was isolated from soil near a pond located on the campus of the Korea Advanced Institute of Science and Technology (KAIST) in Daejeon city, South Korea.…”

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Sphingomonas humi sp. nov., isolated from soil

Han²,

Srinivasan

et al. 2010

J Microbiol.

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A gram-negative, non-motile, non-spore-forming, small, orange, rod-shaped bacterium was isolated from soil in South Korea and characterized to determine its taxonomic position. Phylogenetic analysis based on 16S rRNA gene sequence examination revealed that strain PB323(T) belongs to the family Sphingomonadaceae. The highest degree of sequence similarity was found with Sphingomonas kaistensis PB56(T) (98.9%), followed by Sphingomonas astaxanthinifaciens TDMA-17(T) (98.3%). Chemotaxonomic characteristics (the G+C content of the genomic DNA 69.0 mol%, Q-10 quinone system, C(18:1) omega7c/omega9t/omega12t, C(16:1) omega7c/C(15:0) iso 2OH, C(17:1) omega6c, and C16:0 as the major fatty acids) corroborated assignment of strain PB323(T) to the genus Sphingomonas. Results of physiological and biochemical tests clearly demonstrate that strain PB323(T) represents a distinct species and support its affiliation with the genus Sphingomonas. Based on these data, PB323(T) (=KCTC 12341(T) =JCM 16603T =KEMB 9004-003(T)) should be classified as a type strain of a novel species, for which the name Sphingomonas humi sp. nov. is proposed.

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“…Members of the genus Sphingobacterium have been isolated from clinical materials, raw milk, lichen, fresh leaves, water, soil, compost, activated sludge and soybean plants. Currently, the genus Sphingobacterium includes 32 species with validly published names: S. multivorum, S. mizutaii and the type species, S. spiritivorum (Yabuuchi et al, 1983); S. faecium and S. thalpophilum (Takeuchi &Yokota, 1992); S. daejeonense (Kim et al, 2006); S. composti ; S. canadense (Mehnaz et al, 2007); S. siyangense (Liu et al, 2008); S. kitahiroshimense (Matsuyama et al, 2008); S. anhuiense (Wei et al, 2008); S. bambusae (Duan et al, 2009); S. shayense (He et al, 2010); S. kyonggiense (Choi & Lee, 2012); S. alimentarium and S. lactis (Schmidt et al, 2012); S. detergens (Marqués et al, 2012); S. nematocida (Liu et al, 2012); S. wenxiniae (Zhang et al, 2012); S. caeni (Sun et al, 2013); S. changzhouense (Liu et al, 2013); S. cladoniae (Lee et al, 2013); S. hotanense (Xiao et al, 2013); S. psychroaquaticum (Albert et al, 2013); S. thermophilum (Yabe et al, 2013); S. arenae (Jiang et al, 2014); S. ginsenosidimutans (Son et al, 2013) S. paludis (Feng et al, 2014); S. gobiense (Zhao et al, 2014); and S. mucilaginosum (Du et al, 2015).…”

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confidence: 99%

Sphingobacterium griseoflavum sp. nov., isolated from the insect Teleogryllus occipitalis living in deserted cropland

Long

Liu

Zhang

et al. 2016

International Journal of Systematic and Evolutionary Microbiology

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A Gram-stain-negative, aerobic, rod-shaped, non-motile bacterial strain, designated SCU-B140T , was isolated from the insect Teleogryllus occipitalis. Phylogenetic analysis on the basis of 16S rRNA gene sequence showed that strain SCU-B140 T belonged to the genus Sphingobacterium. Sphingobacterium bambusae KCTC 22814 T (97.87 %) was identified as the most closely related phylogenetic neighbour of strain SCU-B140T . The novel strain was able to grow at salt concentrations of 0-4 % (w/v), at temperatures of 10-40 8C, and at a pH of 6.0-9.0. The major cellular fatty acids were iso-C 15 : 0 , summed feature 3 (iso-C 15 : 0 2-OH and/or C 16 : 1 v7c), C 16 : 0 , C 16 : 0 3-OH, C 18 : 0 and C 14 : 0 . The major polar lipids consisted of phosphatidylethanolamine, three unknown aminophospholipids, an unknown glycolipid and three unknown polar lipids. MK-7 was the major isoprenoid quinone. The DNA G+C content was 41.2 mol%. The DNA-DNA relatedness value between SCU-B140 T and S. bambusae KCTC 22814T was found to be 30.15 %. According to these results, strain SCU-B140 T represents a novel species of the genus Sphingobacterium, for which the name Sphingobacterium griseoflavum sp. nov. is proposed. The type strain is SCU-B140 T (5KCTC 42158 T 5CGMCC

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Sphingobacterium bambusae sp. nov., isolated from soil of bamboo plantation

Cited by 29 publications

References 20 publications

Sphingobacterium lactis sp. nov. and Sphingobacterium alimentarium sp. nov., isolated from raw milk and a dairy environment

Sphingobacterium lactis sp. nov. and Sphingobacterium alimentarium sp. nov., isolated from raw milk and a dairy environment

Sphingomonas humi sp. nov., isolated from soil

Sphingobacterium griseoflavum sp. nov., isolated from the insect Teleogryllus occipitalis living in deserted cropland

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