Spectroscopic characterization of microorganisms by Fourier transform infrared microspectroscopy

Yu, Chenxu; Irudayaraj, Joseph

doi:10.1002/bip.20247

Cited by 146 publications

(140 citation statements)

References 15 publications

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“…Sulphate and thiosulphate reducing bacteria Genus FTIRS, FTIRS-ATR HCA, PCA [16,17] Alicylobacillus Genus FTIRS PCA, SIMCA [20] Strain FTIRS-HATR LDA, PCA [75] Photorhabdus Genus FTIRS-ATR HCA, PCA [18] Xenorhabdus Genus FTIRS-ATR HCA, PCA [18] Arcanobacterium Genus FTIRS ANN [19] Actinomyces Genus FTIRS ANN [19] Trueperella Genus FTIRS ANN [19] Species FTIRS ANN [19] Bacillus Genus FTIRS PCA, SIMCA [20] Species FTIRS, FTIRS-ATR, Diffuse Reflectance-FTIRS PCA, HCA, DFA, CVA, SIMCA [26][27][28][29][30]49,50,54,55] Vegetative/Sporulated FTIRS PCA, CART [83] Escherichia Genus FTIRS-ATR HCA, PCA [18] Species FTIRS, FTIRS-ATR HCA, ANN, PCA, SIMCA, CVA [49][50][51][52][53][54]86,92] Escherichia coli Sequence type FTIRS, FTIRS-ATR PC-DFA, PLSDA, HCA, SIMCA [67,68] Strain FTIRS PCA, SIMCA, CVA [49,50,52,73] MLVA profile FTIRS HCA, CVA [72] Listeria spp. Species FTIRS, FTIRS-ATR, FTIR microspectroscopy CVA, ANN, SCDA, PLSRDA, PCA [5,[21][22][23][24][25]…”

Section: Bacteria Discrimination Level Infrared Technique Chemometricmentioning

confidence: 99%

“…Species FTIRS HCA, ANN, PCA, SIMCA [45,49,53,86,92] Stenotrophomonas maltophilia Species FTIRS PCA, ANN [45,55] Ralstonia pickettii Species FTIRS ANN [45] Achromobacter spp Species FTIRS ANN [45] Yersinia spp. Species FTIRS, FTIRS-ATR ANN, SIMCA, PCA, CVA [47,50,52] Yersinia enterocolitica Serotype FTIRS ANN [47] Biotype FTIRS ANN [47] Yersinia ruckeri Biotype FTIRS ANN [80] Oscillatoria limosa Species FTIRS-ATR PCA, ANN [48] Arthrospira platensis Species FTIRS-ATR PCA, ANN [48] Phormidium spp. Species FTIRS-ATR PCA, ANN [48] Scytonem javanicum Species FTIRS-ATR PCA, ANN [48] Nostoc punctiform Species FTIRS-ATR PCA, ANN [48] Salmonella spp.…”

Section: Bacteria Discrimination Level Infrared Technique Chemometricmentioning

confidence: 99%

“…Species FTIRS-ATR PCA, ANN [48] Scytonem javanicum Species FTIRS-ATR PCA, ANN [48] Nostoc punctiform Species FTIRS-ATR PCA, ANN [48] Salmonella spp. Species FTIRS-ATR PCA, SIMCA, CVA [50,52] Live/Dead FTIRS-ATR PCA, SIMCA [63] Salmonella enterica Serotype FTIRS, FTIRS-ATR PCA, SIMCA, CVA Strain FTIRS HCA [77] Phage type FTIRS PLS-DA [81] Shigella spp. Species FTIRS-ATR PCA, SIMCA, CVA [50,52] Vibrio spp.…”

Section: Bacteria Discrimination Level Infrared Technique Chemometricmentioning

confidence: 99%

“…Species FTIRS-ATR PCA, SIMCA, CVA [50,52] Live/Dead FTIRS-ATR PCA, SIMCA [63] Salmonella enterica Serotype FTIRS, FTIRS-ATR PCA, SIMCA, CVA Strain FTIRS HCA [77] Phage type FTIRS PLS-DA [81] Shigella spp. Species FTIRS-ATR PCA, SIMCA, CVA [50,52] Vibrio spp. Species FTIRS-ATR PCA, SIMCA [50] Enterobacter spp.…”

Section: Bacteria Discrimination Level Infrared Technique Chemometricmentioning

confidence: 99%

See 3 more Smart Citations

An Overview of the Evolution of Infrared Spectroscopy Applied to Bacterial Typing

Quintelas

Ferreira

Lopes

et al. 2017

Biotechnology Journal

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The sustained emergence of new declared bacterial species makes typing a continuous challenge for microbiologists. Molecular biology techniques have a very significant role in the context of bacterial typing, but they are often very laborious, time consuming, and eventually fail when dealing with very closely related species. Spectroscopic-based techniques appear in some situations as a viable alternative to molecular methods with advantages in terms of analysis time and cost. Infrared and mass spectrometry are among the most exploited techniques in this context: particularly, infrared spectroscopy emerged as a very promising method with multiple reported successful applications. This article presents a systematic review on infrared spectroscopy applications for bacterial typing, highlighting fundamental aspects of infrared spectroscopy, a detailed literature review (covering different taxonomic levels and bacterial species), advantages, and limitations of the technique over molecular biology methods and a comparison with other competing spectroscopic techniques such as MALDI-TOF MS, Raman, and intrinsic fluorescence. Infrared spectroscopy possesses a high potential for bacterial typing at distinct taxonomic levels and worthy of further developments and systematization. The development of databases appears fundamental toward the establishment of infrared spectroscopy as a viable method for bacterial typing.

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Section: Bacteria Discrimination Level Infrared Technique Chemometricmentioning

confidence: 99%

Section: Bacteria Discrimination Level Infrared Technique Chemometricmentioning

confidence: 99%

Section: Bacteria Discrimination Level Infrared Technique Chemometricmentioning

confidence: 99%

Section: Bacteria Discrimination Level Infrared Technique Chemometricmentioning

confidence: 99%

See 2 more Smart Citations

An Overview of the Evolution of Infrared Spectroscopy Applied to Bacterial Typing

Quintelas

Ferreira

Lopes

et al. 2017

Biotechnology Journal

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show abstract

“…SERS and FTIR spectra exhibit characteristics of bacteria cell components such as fatty acids, proteins, nucleic acids, and carbohydrates (Knauer et al, 2010;Yu and Irudayaraj, 2005). Previous studies demonstrate that the use of SERS and FTIR could be a viable approach for the characterization and identification of whole bacteria cells at the genus and species level (Dziuba et al, 2007;Wang et al, 2010;Yu and Irudayaraj, 2005).…”

Section: Introductionmentioning

confidence: 99%

Arsenic interception by cell wall of bacteria observed with surface-enhanced Raman scattering

Tian

Zhuang

et al. 2012

Journal of Microbiological Methods

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Mid‐Infrared Sensors for The Rapid Analysis of Select Microbial Food Borne Pathogens

Mauer

Reuhs

2008

Wiley Handbook of Science and Technology for Homeland Security

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Fourier‐transform infrared (FTIR) spectroscopy methods enable chemical discrimination of intact bacterial cells or cell components and have potential use for the rapid detection and analysis of foodborne pathogens. This article presents a review of FTIR techniques and sensors for bacterial analysis, as well as advantages, disadvantages, and challenges that remain for the development of FTIR pathogen detection methods.

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Spectroscopic characterization of microorganisms by Fourier transform infrared microspectroscopy

Cited by 146 publications

References 15 publications

An Overview of the Evolution of Infrared Spectroscopy Applied to Bacterial Typing

An Overview of the Evolution of Infrared Spectroscopy Applied to Bacterial Typing

Arsenic interception by cell wall of bacteria observed with surface-enhanced Raman scattering

Mid‐Infrared Sensors for The Rapid Analysis of Select Microbial Food Borne Pathogens

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