A conjugate of horseradish peroxidase and the encephalitogenic basic protein from myelin has been used to study the antigen reactivity of tissue in the autoimmune disease, experimental allergic encephalomyelitis. Control conjugates were also prepared of peroxidase and bovine serum albumin and of peroxidase and lysozyme, another basic protein. The basic protein from myelin conjugate was specifically bound by lymph node cells from rabbits immunized against the basic protein.Some of these cells appeared to be plasma cells. The conjugate was also specifically bound by occasional cells in the spinal-cord infiltrates of animals with early signs of allergic encephalomyelitis. These cells resembled large lymphocytes and plasma cells. There was no difference between the binding of basic protein of bovine and rabbit origin. The findings suggest the possibility that a local release of antibody within the target organ may play a role in the pat4ogenesis of allergic encephalomyelitis.Experimental allergic encephalomyelitis (EAE) is an autoimmune disease believed to be a manifestation of delayed hypersensitivity to the encephalitogenic basic protein of myelin (BP) (1-4). However, the pathogenetic mechanisms involved in EAE, and whether antibody participates in the disease process, are far from clear. BP was coupled to peroxidase with glutaraldehyde, which reacts with the e-amino groups of lysine (7), by the procedure developed by Avrameas (5) for other proteins. It was necessary to use small quantities of BP, which has many lysine groups, in order to obtain a soluble product. The molecular ratio of protein to peroxidase of about 1 to 7, however, was similar to that recommended by Avrameas. The conjugate was prepared by dissolving 0.3-0.6 mg of BP and 6 mg of peroxidase (type VI, RZ 3.1; Sigma) in 0.4 ml of 0.1 M phosphate buffer (pH 6.8). Then, 0.1 ml of 0.25% glutaraldehyde, diluted with phosphate buffer from an 8% aqueous preparation (Polysciences), was added dropwise with gentle mixing. After the mixture had stood for 2 hr at room temperature, the unbound glutaraldehyde was removed by dialysis for 24 hr at 40C against three 2-liter changes of phosphate-buffered saline (PBS; 0.01 M phosphate buffer (pH 7.2)-0.85% NaCl). Centrifugation at 36,000 X g for 30 min at 40C removed any insoluble product that formed. Several mnodificationss of the Avrameas procedure were tried, such as changing the concentration of peroxidase or glutaraldehyde, the pH and the conjugation time, or adding BP to peroxidase previously treated with glutaraldehyde. These modifications often gave active conjugates, but did not offer any advantages. The final BP-peroxidase conjugate was soluble and remained active for more than 2 months when stored frozen in small aliquots to minimize multiple freezings and thawings. As controls, conjugates of peroxidase *with bovine serum albumin (BSA) (Sigma) and with lysozyme from egg white (Sigma) were prepared identically, except that 2.5 mg and 0.4 mg, respectively, were used. Lysozyme is a protein similar to ...