Specific Partial Reduction of Geranylgeranyl Diphosphate by an Enzyme from the Thermoacidophilic Archaeon
Sulfolobus acidocaldarius
Yields a Reactive Prenyl Donor, Not a Dead-End Product
Abstract:Geranylgeranyl reductase from Sulfolobus acidocaldarius was shown to catalyze the reduction of geranylgeranyl groups in the precursors of archaeal membrane lipids, generally reducing all four double bonds. However, when geranylgeranyl diphosphate was subjected to the reductase reaction, only three of the four double bonds were reduced. Mass spectrometry and acid hydrolysis indicated that the allylic double bond was preserved in the partially reduced product derived from geranylgeranyl diphosphate. Thus, the re… Show more
“…It was intriguing that the reductase was highly specific to the x-double bond of a geranylgeranyl group. This site-specific reduction was unprecedented and different from the reduction patterns of known archaeal GGRs that typically reduce a geranylgeranyl group to a phytanyl group [14][15][16][17] and of plant-type GGRs that convert it into a phytyl group [18]. The mechanisms responsible for these distinct patterns will be discussed later.…”
Section: Discussionmentioning
confidence: 96%
“…4B). Based on the previous data of similar radio-TLC analyses of the GGR reaction products from GGPP and GGGP [16], the slight distance between the spots of the substrate and the product suggested that only one double bond of the geranylgeranyl chain was saturated. This observation was consistent with the fact that tetrahydro-DGGGP-glycerol produced in E. coli cells harboring pBAD-ALB4-MA1492 had one saturated isoprene unit per isoprenoid hydrocarbon chain (Fig.…”
Section: In Vitro Characterization Of Recombinant Ma1492mentioning
confidence: 99%
“…geranylgeranyl reductase (GGR). Archaeal GGRs reduce all double bonds in the geranylgeranyl groups of substrate lipids to yield lipids with fully saturated phytanyl groups [14][15][16][17]. They are homologous with the plant GGRs that are responsible for the biosynthesis of chlorophyll, phylloquinone and tocopherol, which catalyze the partial reduction of a geranylgeranyl group to give a phytyl group [18].…”
Section: Introductionmentioning
confidence: 99%
“…They are homologous with the plant GGRs that are responsible for the biosynthesis of chlorophyll, phylloquinone and tocopherol, which catalyze the partial reduction of a geranylgeranyl group to give a phytyl group [18]. Like plant GGRs, when reducing geranylgeranyl diphosphate (GGPP), which is a prenyl donor substrate for archaeal membrane lipid biosynthesis, GGR from a thermoacidophilic archaeon Sulfolobus solfataricus leaves its a-isoprene unit unsaturated so that the product phytyl diphosphate is available for subsequent prenyl transfer steps [16]. The other archaeal PRs, which have been discovered based on their homology to GGR, play roles in various isoprenoid biosynthetic routes.…”
Saturation of a prenyl group to various levels is a frequently observed modification of isoprenoids. The members of the geranylgeranyl reductase family, however, are the only known enzymes responsible for such reductive modifications in archaea. A methanogenic archaeon, Methanosarcina acetivorans, has proteins homologous to phytoene desaturase CrtI, which is the carotenogenic enzyme that catalyzes oxidation/isomerization of phytoene to lycopene, but their function in carotenogenesis is unlikely in a methanogen that does not produce carotenoids. In the present study, we identified one of the homologues, MA1492, as a new type of archaeal geranylgeranyl reductase that is not homologous to known geranylgeranyl reductases. The expression of MA1492 in Escherichia coli cells, which were genetically modified to produce unsaturated archaeal‐type lipids, led to the production of partially saturated lipid derivatives. Furthermore, we analyzed the substrate specificity of recombinant MA1492 via in vitro assays. The LC‐MS, or radio‐TLC, analysis of the reaction products showed that the enzyme was definitely specific to compounds containing C20 geranylgeranyl groups and reduced only one of four double bonds in a geranylgeranyl chain. The GC‐MS analysis of the product from geranylgeraniol confirmed that the reduction selectively occurred on the ω‐terminal double bond. The available crystallographic structure of an orthologue enzyme may explain the reaction mechanism that achieves the substrate specificity and regiospecificity.
Database
Microbial Genome Database (http://mbgd.genome.ad.jp/), EMBOSS Needle (https://www.ebi.ac.uk/Tools/psa/emboss_needle)
“…It was intriguing that the reductase was highly specific to the x-double bond of a geranylgeranyl group. This site-specific reduction was unprecedented and different from the reduction patterns of known archaeal GGRs that typically reduce a geranylgeranyl group to a phytanyl group [14][15][16][17] and of plant-type GGRs that convert it into a phytyl group [18]. The mechanisms responsible for these distinct patterns will be discussed later.…”
Section: Discussionmentioning
confidence: 96%
“…4B). Based on the previous data of similar radio-TLC analyses of the GGR reaction products from GGPP and GGGP [16], the slight distance between the spots of the substrate and the product suggested that only one double bond of the geranylgeranyl chain was saturated. This observation was consistent with the fact that tetrahydro-DGGGP-glycerol produced in E. coli cells harboring pBAD-ALB4-MA1492 had one saturated isoprene unit per isoprenoid hydrocarbon chain (Fig.…”
Section: In Vitro Characterization Of Recombinant Ma1492mentioning
confidence: 99%
“…geranylgeranyl reductase (GGR). Archaeal GGRs reduce all double bonds in the geranylgeranyl groups of substrate lipids to yield lipids with fully saturated phytanyl groups [14][15][16][17]. They are homologous with the plant GGRs that are responsible for the biosynthesis of chlorophyll, phylloquinone and tocopherol, which catalyze the partial reduction of a geranylgeranyl group to give a phytyl group [18].…”
Section: Introductionmentioning
confidence: 99%
“…They are homologous with the plant GGRs that are responsible for the biosynthesis of chlorophyll, phylloquinone and tocopherol, which catalyze the partial reduction of a geranylgeranyl group to give a phytyl group [18]. Like plant GGRs, when reducing geranylgeranyl diphosphate (GGPP), which is a prenyl donor substrate for archaeal membrane lipid biosynthesis, GGR from a thermoacidophilic archaeon Sulfolobus solfataricus leaves its a-isoprene unit unsaturated so that the product phytyl diphosphate is available for subsequent prenyl transfer steps [16]. The other archaeal PRs, which have been discovered based on their homology to GGR, play roles in various isoprenoid biosynthetic routes.…”
Saturation of a prenyl group to various levels is a frequently observed modification of isoprenoids. The members of the geranylgeranyl reductase family, however, are the only known enzymes responsible for such reductive modifications in archaea. A methanogenic archaeon, Methanosarcina acetivorans, has proteins homologous to phytoene desaturase CrtI, which is the carotenogenic enzyme that catalyzes oxidation/isomerization of phytoene to lycopene, but their function in carotenogenesis is unlikely in a methanogen that does not produce carotenoids. In the present study, we identified one of the homologues, MA1492, as a new type of archaeal geranylgeranyl reductase that is not homologous to known geranylgeranyl reductases. The expression of MA1492 in Escherichia coli cells, which were genetically modified to produce unsaturated archaeal‐type lipids, led to the production of partially saturated lipid derivatives. Furthermore, we analyzed the substrate specificity of recombinant MA1492 via in vitro assays. The LC‐MS, or radio‐TLC, analysis of the reaction products showed that the enzyme was definitely specific to compounds containing C20 geranylgeranyl groups and reduced only one of four double bonds in a geranylgeranyl chain. The GC‐MS analysis of the product from geranylgeraniol confirmed that the reduction selectively occurred on the ω‐terminal double bond. The available crystallographic structure of an orthologue enzyme may explain the reaction mechanism that achieves the substrate specificity and regiospecificity.
Database
Microbial Genome Database (http://mbgd.genome.ad.jp/), EMBOSS Needle (https://www.ebi.ac.uk/Tools/psa/emboss_needle)
“…This is the first report of the identification of a physiological electron donor for archaeal GGR. On the other hand, previously isolated GGR from a thermoacidophilic archaeon Sulfolobus acidocaldarius (6) catalyzed the partial reduction of archaeal lipid precursors in E. coli without help from archael ferredoxins, suggesting its relatively broad preference toward electron donors. The effect of the archaeal lipid production on the growth of the host bacterial cells was evaluated because they were supposed to possess an unnatural archaeal-bacterial chimeric lipid membrane.…”
Archaea produce membrane lipids that typically possess fully saturated isoprenoid hydrocarbon chains attached to the glycerol moiety via ether bonds. They are functionally similar to, but structurally and biosynthetically distinct from, the fatty acid-based membrane lipids of bacteria and eukaryotes. It is believed that the characteristic lipid structure helps archaea survive under severe conditions such as extremely low or high pH, high salt concentrations, and/or high temperatures. We detail here the first successful production of an intact archaeal membrane lipid, which has fully saturated isoprenoid chains, in bacterial cells. The introduction of six phospholipid biosynthetic genes from a methanogenic archaeon, Methanosarcina acetivorans, in Escherichia coli enabled the host bacterium to synthesize the archaeal lipid, i.e., diphytanylglyceryl phosphoglycerol, while a glycerol modification of the phosphate group was probably catalyzed by endogenous E. coli enzymes. Reduction of the isoprenoid chains occurred only when archaeal ferredoxin was expressed with geranylgeranyl reductase, suggesting the role of ferredoxin as a specific electron donor for the reductase. This report is the first identification of a physiological reducer for archaeal geranylgeranyl reductase. On the other hand, geranylgeranyl reductase from the thermoacidophilic archaeon Sulfolobus acidocaldarius could, by itself, replace both its orthologue and ferredoxin from M. acetivorans, which indicated that an endogenous redox system of E. coli reduced the enzyme.
Nonpathogenic Mycobacterium species produce rare cyclic C(35) terpenes that are biosynthesized by cyclization of Z-type C(35) polyprenyl diphosphate. To provide deeper insight into the biosynthesis of C(35) terpenes, we carried out functional analyses of three Z-prenyltransferase homologues in M. vanbaalenii identified by genomic analysis. Mvan_3822, a novel bifunctional Z-prenyltransferase, biosynthesizes C(35)-heptaprenyl diphosphate as a main product from (E,E)-farnesyl diphosphate (E,E-FPP) and (E,E,E)-geranylgeranyl diphosphate (E,E,E-GGPP), but produces a C(50)-decaprenyl diphosphate from geranyl diphosphate. Mvan_1705 is a novel Z,E,E-GGPP synthase. In addition, novel cyclic C(35) terpenes, (14E)- and (14Z)-dehydroheptaprenylcycline, were identified as minor metabolites in nonpathogenic Mycobacterium cells. C(35) terpenes could be biosynthesized by two routes, in which E and Z geometric isomers of heptaprenyl diphosphate are produced from E,E-FPP and E,E,E-GGPP, and the prenylreductase responsible for the biosynthesis of C(35) terpenes could reduce both E and Z prenyl residues.
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