Species Names in the PhyloCode: The Approach Adopted by the International Society for Phylogenetic Nomenclature

Dayrat, Benoı̂t; Clarke, Julia A.; Queiroz, Kevin de

doi:10.1080/10635150802172176

Cited by 30 publications

(31 citation statements)

References 30 publications

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“…Only species names are italicized herein. Pursuant to Article 21.2 of the PhyloCode, the first word of species names are considered prenomen, not genus names (see also Dryat et al 2008). …”

Section: Methodsmentioning

confidence: 99%

Taxonomic revision and phylogenetic analysis of the flightless Mancallinae (Aves, Pan-Alcidae)

Smith¹

2011

101

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Although flightless alcids from the Miocene and Pliocene of the eastern Pacific Ocean have been known for over 100 years, there is no detailed evaluation of diversity and systematic placement of these taxa. This is the first combined analysis of morphological and molecular data to include all extant alcids, the recently extinct Great Auk Pinguinus impennis, the mancalline auks, and a large outgroup sampling of 29 additional non-alcid charadriiforms. Based on the systematic placement of Mancallinae outside of crown clade Alcidae, the clade name Pan-Alcidae is proposed to include all known alcids. An extensive review of the Mancallinae fossil record resulted in taxonomic revision of the clade, and identification of three new species. In addition to positing the first hypothesis of inter-relationships between Mancallinae species, phylogenetic results support placement of Mancallinae as the sister taxon to all other Alcidae, indicating that flightlessness evolved at least twice in the alcid lineage. Convergent osteological characteristics of Mancallinae, the flightless Great Auk, and Spheniscidae are summarized, and implications of Mancallinae diversity, radiation, and extinction in the context of paleoclimatic changes are discussed.

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“…Only species names are italicized herein. Pursuant to Article 21.2 of the PhyloCode, the first word of species names are considered prenomen, not genus names (see also Dryat et al 2008). …”

Section: Methodsmentioning

confidence: 99%

Taxonomic revision and phylogenetic analysis of the flightless Mancallinae (Aves, Pan-Alcidae)

Smith¹

2011

101

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“…Concerning species names, we used binominal names – meaning prenomen (usually the genus name in the rank‐based code) and species name – as suggested by Dayrat et al . (2004), and now recommended by the recently adopted Article 21.5 of the PhyloCode (Dayrat et al . 2008).…”

Section: Methodsmentioning

confidence: 99%

Molecular taxonomy and phylogeny of the Geodiidae (Porifera, Demospongiae, Astrophorida) – combining phylogenetic and Linnaean classification

CÃ¡rdenas¹,

Rapp²,

Schänder³

et al. 2009

Zoologica Scripta

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Cárdenas, P., Rapp, H. T., Schander, C. & Tendal, O. S. (2009). Molecular taxonomy and phylogeny of the Geodiidae (Porifera, Demospongiae, Astrophorida) – combining phylogenetic and Linnaean classification.—Zoologica Scripta, 39, 89–106. According to the fossil records, the Geodiidae represents one of the oldest families of demosponges (Phylum Porifera). There are approximately 220 described extant species, geographically and bathymetrically widely distributed around the world. Species of this family all share a two‐layered cortex with ball‐shaped spicules called ‘sterrasters’ in the endocortex. However, molecular studies have questioned the monophyly of the group. Moreover, the evolutionary history and the intrafamily relationships of the Geodiidae are not fully resolved. Using a partial sequence of the cytochrome c oxidase subunit 1 (COI) gene and a partial sequence of the 28S rDNA gene (D1–D2 domains), we present the first molecular phylogeny focusing on this group. The congruent results from the two gene fragments suggest that (i) the Geodiidae is monophyletic, (ii) the Erylinae/Geodinae subdivision sensuSollas, 1888 is valid and that (iii) Isops and Sidonops are junior synonyms of Geodia. The synonymization of Isops and Sidonops implies that the oscule/pore morphology as a diagnostic character should be abandoned. Geodia hentscheli nom. nov. has been given for Geodia mesotriaena (Hentschel, 1929). This study served as the basis for a revised phylogenetic classification of the Geodiidae. Well‐supported clades led to the establishment of clade names following the PhyloCode. The Geodinae clade is strongly supported and notably composed of Depressiogeodia, Cydonium and Geodia. A morphological synapomorphy of Geodinae is the presence of euasters in the ectocortex. The Erylinae (Erylus, Penares, Caminus and Pachymatisma) form a strongly supported monophyletic group with three morphological synapomorphies: (i) loss of anatriaenes and protriaenes, (ii) microrhabds (or spherules) in the ectocortex and (iii) short‐shafted triaenes. The Erylus monophyly is ambiguous. Erylus species are distributed in three well‐supported clades. Finally, spicule homology in the cortex of the Geodiidae is discussed.

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“…Here, we use the name in this recommended sense to reference only the most recent common ancestor of extant tinamous and all of its descendants. Species conventions follow Dayrat et al (2008).…”

Section: Terminologymentioning

confidence: 99%

The Anatomy and Taxonomy of the Exquisitely Preserved Green River Formation (Early Eocene) Lithornithids (Aves) and the Relationships of Lithornithidae

Nesbitt

Clarke

2016

Bulletin of the American Museum of Natural History

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Species Names in the PhyloCode: The Approach Adopted by the International Society for Phylogenetic Nomenclature

Cited by 30 publications

References 30 publications

Taxonomic revision and phylogenetic analysis of the flightless Mancallinae (Aves, Pan-Alcidae)

Taxonomic revision and phylogenetic analysis of the flightless Mancallinae (Aves, Pan-Alcidae)

Molecular taxonomy and phylogeny of the Geodiidae (Porifera, Demospongiae, Astrophorida) – combining phylogenetic and Linnaean classification

The Anatomy and Taxonomy of the Exquisitely Preserved Green River Formation (Early Eocene) Lithornithids (Aves) and the Relationships of Lithornithidae

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