Clustered regularly interspaced short palindromic repeats (CRISPR) arrays and CRISPR-associated (Cas) proteins constitute the CRISPR-Cas systems that provide adaptive immunity against invading mobile genetic elements (phages, integrative and conjugative elements, and plasmids) in many microorganisms and most archaea (1). This array consists of direct repeat sequences (repeats) and spacer sequences (spacers) that come from phages, plasmids, or other mobile genetic elements. Cas proteins (nucleases) are essential for the immunity provided by these systems. The immunological mechanism involves the integration of fragments of foreign genetic elements into the arrays, which are transcribed and processed into small interfering RNAs that can guide Cas proteins for targeting cognate genomes in a sequence-specific manner. The spacers seem to be incorporated into a specific end of the leader sequences of the loci (1). The positional information indicates a timeline of spacer acquisition events, and this phenomenon can form unique and hypervariable loci. This positional information can be applied for genotyping of microorganisms and providing insights