Stable isotope analysis of carbon (C) and nitrogen (N) was used to study the nature and origin of the suspended particulate matter (SPM) in a small Mediterranean reservoir, Lake Sos Canales (SC). The d 13 C and d 15 N isotopic ratios, physical-chemical parameters, nutrients and phytoplankton were analyzed ca. monthly over a hydrological year on the vertical profile at two stations (lacustrine and riverine). SPM quantity and composition were related to the hydrological annual dynamic. In Mediterranean reservoirs, water-level fluctuation is one of the most important stressors, largely dependent on the strong seasonality of climate and water exploitation for human uses. Mediterranean reservoirs show different phases during a hydrological year, alternating empty and low water level (summer-autumn), re-filling (winter-spring) and high water (spring-summer) phases. Isotopic ratios of C and N were similar on the vertical profile and at the two stations during the low water phase, but differed during the re-filling and high water phases. Significant correlations were found between d 15 N and water level, and between d 13 C and temperature in the surface layer at the lacustrine station. An unusual d 13 C distribution along the water column during the re-filling phase was interpreted on the basis of phytoplankton species composition, mainly due by Gymnodinium uberrimum.