We study the dynamics of the non-classical correlations for few atom systems in the presence of strong interactions for a number of recently developed adiabatic state preparation protocols. We show that entanglement can be created in a controlled fashion and can be attributed to two distinct sources, the atom-atom interaction and the distribution of atoms among different traps.Keywords Entanglement · Spatial adiabatic passage 1 IntroductionCorrelations between quantum particles are responsible for many properties of advanced solid state systems which cannot be derived from single particle behaviour [1]. Recently these correlations were also recognised as a resource in quantum information and metrology, where they have to be deliberately created and engineered [2]. However, quantum correlations are known to be fragile, and preparing entangled states with high fidelity is often a difficult task [3,4].The Hilbert space of interacting few or many particle systems becomes more complex and crowded, and preparing quantum states in such systems has an additional degree of complexity. However, over the last two decades, systems of ultracold atoms have been developed where control over almost all internal and external degrees of freedom is possible. By today, ground state systems of a handful of particles can be deterministically prepared in laboratories [5], and dynamical control of their center-of-mass degree of freedom is possible using time-dependent electromagnetic fields [6] . The interaction between these ultracold atoms is usually short-range and for many species so-called Feshbach resonances exist, that can be used to adjust the interaction strength [7].One possible strategy for controlling interacting few atom systems is to generalise know single particle protocols. Out of these, one class that allows for high fidelities are adiabatic techniques, where the evolution follows one specific eigenstate at all times. For the control of the centre-of-mass of single particles, these are know as spatial adiabatic passage