SPArrOW: a flexible, interactive and scalable pipeline for spatial transcriptomics analysis
Lotte Pollaris,
Bavo Vanneste,
Benjamin Rombaut
et al.
Abstract:Current spatial transcriptomics technologies are increasingly able to measure large gene panels at subcellular resolution, but a major bottleneck in this rapidly advancing field is the computational analysis and interpretation of the data. To bridge this gap, here we present SPArrOW, a flexible, modular and scalable pipeline for processing spatial transcriptomics data. SPArrOW improves cell segmentation and leads to better overall data quality, resulting in more accurate cell annotations at the single-cell lev… Show more
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