Molecular modeling was employed to both visualize and probe our understanding of carbon dioxide sequestration within a bituminous coal. A large-scale (>20,000 atoms) 3D molecular representation of Pocahontas No. 3 coal was generated. This model was constructed based on a the review data of Stock and Muntean 1 , oxidation and decarboxylation data for aromatic clustersize frequency of Stock and Obeng 2 , and the combination of Laser Desorption Mass Spectrometry data with HRTEM 3 , enabled the inclusion of a molecular weight distribution. The model contains 21,931 atoms, with a molecular mass of 174,873 amu, and an average molecular weight of 714 amu, with 201 structural components. The structure was evaluated based on several characteristics to ensure a reasonable constitution (chemical and physical representation). The helium density of Pocahontas No. 3 coal is 1.34 g/cm 3 (dmmf) 4 and the model was 1.27 g/cm 3 . The structure is microporous, with a pore volume comprising 34% of the volume as expected for a coal of this rank. The representation was used to visualize CO 2 , and CH 4 capacity, and the role of moisture in swelling and CO 2 , and CH 4 capacity reduction. Inclusion of 0.68% moisture by mass (ash-free) enabled the model to swell by 1.2% (volume). Inclusion of CO 2 enabled volumetric swelling of 4%.