We have previously shown that long tone burst high mechanical index ultrasound (US) and microbubble (MB) therapy can restore perfusion in both an in vitro and in vivo model of microvascular obstruction (MVO). Addition of MB to US has been shown to potentiate the efficacy of thrombolytics on large venous thrombi, however the optimal US parameters for achieving microvascular reperfusion of MVO caused by microthrombi, when combined with tissue plasminogen activator (tPA) are unknown. We sought to elucidate the specific effects of US, with and without tPA, for effective reperfusion of MVO in an in vitro model using both venous and arterial microthrombi. Venous and arterial type microthrombi were infused onto a mesh with 40-μm pores to simulate MVO. Pulsed US (1 MHz) was delivered with inertial cavitation (IC) (1.0 MPa, 1000 cycles, 0.33 Hz) and stable cavitation (SC) US (0.23 MPa, 20% duty, 0.33 Hz) regimes while MB suspension (2×106 MBs/mL) was infused. The efficacy of sonoreperfusion with these parameters was tested with and without tPA. Sonoreperfusion efficacy was significantly greater for IC+tPA when compared to tPA alone, IC, SC, and SC+tPA, suggesting lytic synergism between tPA and US for both venous and arterial type microthrombi. In contrast to our previous in vitro studies using 1.5 MPa at 5000 US cycles without tPA, the IC regime used herein used 90% less US energy. These findings suggest an IC regime can be used with tPA synergistically to achieve a high degree of fibrinolysis for both thrombus types.