The sol operon of Clostridium acetobutylicum is the essential transcription unit for formation of the solvents butanol and acetone. The recent proposal that transcriptional regulation of this operon is controlled by the repressor Orf5/SolR (R. V. Nair, E. M. Green, D. E. Watson, G. N. Bennett, and E. T. Papoutsakis, J. Bacteriol. 181:319-330, 1999) was found to be incorrect. Instead, regulation depends on activation, most probably by the multivalent transcription factor Spo0A. The operon is transcribed from a single promoter. A second signal identified in primer extension studies results from mRNA processing and can be observed only in the natural host, not in a heterologous host. The first structural gene in the operon (adhE, encoding a bifunctional butyraldehyde/butanol dehydrogenase) is translated into two different proteins, the mature AdhE enzyme and the separate butanol dehydrogenase domain. The promoter of the sol operon is preceded by three imperfect repeats and a putative Spo0A-binding motif, which partially overlaps with repeat 3 (R3). Reporter gene analysis performed with the lacZ gene of Thermoanaerobacterium thermosulfurigenes and targeted mutations of the regulatory region revealed that the putative Spo0A-binding motif, R3, and R1 are essential for control. The data obtained also indicate that an additional activator protein is involved.Regulation of butanol formation by the obligately anaerobic bacterium Clostridium acetobutylicum, the model organism used in molecular biology for the apathogenic clostridia, is still not completely understood. Research during the last decade led to cloning and sequencing of the sol operon, designated on the basis of its function in solvent formation, which includes the genes that encode a butyraldehyde/butanol dehydrogenase (adhE) and an acetoacetyl coenzyme A:butyrate/acetate coenzyme A transferase (ctfA and ctfB) (9, 21). This operon is located on a megaplasmid (6, 7), and transcriptional induction of it marks the onset of butanol formation (30). During the solvent production phase, the sol operon is shut down, and the monocistronic bdhB operon, which encodes another butanol dehydrogenase and is located on the chromosome, takes over after it is induced (27, 30). The corresponding butyraldehyde dehydrogenase is still unknown. It has been proposed that the sol operon is controlled by two promoters, based on primer extension studies (9, 21). The sequence of the putative distal promoter, designated P 1 or S 2 , exhibited almost perfect homology to the consensus sequence of housekeeping promoters (just one mismatch), whereas the sequence of the putative proximal promoter (P 2 or S 1 ) had at least five mismatches (in the 12 nucleotides comprising the Ϫ35 and Ϫ10 regions) and unusual spacing of the two promoter boxes (8, 9, 21). Nevertheless, based on signal intensities obtained in primer extension experiments, most of the transcripts are initiated at this transcription start point (9).A major step forward in understanding the regulation described above seemed to be th...