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Two-component regulatory systems represent the major paradigm for signal transduction in prokaryotes. The simplest systems are composed of a sensor kinase and a response regulator. The sensor is often a membrane protein that senses a change in environmental conditions and is autophosphorylated by ATP on a histidine residue. The phosphoryl group is transferred onto an aspartate of the response regulator, which activates the regulator and alters its output, most often resulting in a change in gene expression. In this review, we present an historical view of the archetype EnvZ/OmpR two-component signaling system and then we provide a new view of signaling based on our recent experiments. EnvZ responds to cytoplasmic signals that arise from changes in the extracellular milieu (1), and OmpR acts canonically (requiring phosphorylation) to regulate the porin genes and non-canonically (without phosphorylation) to activate the acid stress response (2, 3). Herein we describe how insights gleaned from stimulus recognition and response in EnvZ are relevant to nearly all HK-RRs.
Two-component regulatory systems represent the major paradigm for signal transduction in prokaryotes. The simplest systems are composed of a sensor kinase and a response regulator. The sensor is often a membrane protein that senses a change in environmental conditions and is autophosphorylated by ATP on a histidine residue. The phosphoryl group is transferred onto an aspartate of the response regulator, which activates the regulator and alters its output, most often resulting in a change in gene expression. In this review, we present an historical view of the archetype EnvZ/OmpR two-component signaling system and then we provide a new view of signaling based on our recent experiments. EnvZ responds to cytoplasmic signals that arise from changes in the extracellular milieu (1), and OmpR acts canonically (requiring phosphorylation) to regulate the porin genes and non-canonically (without phosphorylation) to activate the acid stress response (2, 3). Herein we describe how insights gleaned from stimulus recognition and response in EnvZ are relevant to nearly all HK-RRs.
DcuS is the membrane-integral sensor histidine kinase of the DcuSR two-component system inThe DcuSR (dicarboxylate uptake sensor and regulator) system of Escherichia coli is a typical two-component system consisting of a membranous sensor kinase (DcuS) and a cytoplasmic response regulator (DcuR) (11,26,48). DcuS responds to C 4 -dicarboxylates like fumarate, malate, or succinate (19). In the presence of the C 4 -dicarboxlates, the expression of the genes of anaerobic fumarate respiration (dcuB, fumB, and frdABCD) and of aerobic C 4 -dicarboxylate uptake (dctA) is activated. DcuS is a histidine protein kinase composed of two transmembrane helices with an intermittent sensory PAS domain in the periplasm (PAS P ) that was also termed the PDC domain (for PhoQ/DcuS/DctB/CitA domain or fold) (7,20,32,48). The second transmembrane helix is followed by a cytoplasmic PAS domain (PAS C ) and the C-terminal transmitter domain. PAS C functions in signal transfer from transmembrane helix 2 (TM2) to the kinase domain (9). The C-terminal part of the transmitter domain consists of a catalytic or HATPase (histidine kinase/ATPase) subdomain for autophosphorylation of DcuS (16). The N-terminal part of the transmitter contains two conserved ␣-helical regions, including a conserved His residue which is the site for autophosphorylation. The ␣-helices serve in dimerization and form a four-helix bundle in the kinase dimer (dimerization and histidine phosphotransfer [DHp] domain) (25,35,42,44).The dimeric sensor kinases have been supposed to phosphorylate mutually, by the catalytic domain of one monomer, the His residue of the partner monomer (10). The oligomeric state of the membrane-bound sensor kinases EnvZ and VirA was also deduced from in vivo complementation studies (31,46). In addition, signal transduction across the membrane and along cytoplasmic PAS domains appears to be a mechanical process requiring oligomeric proteins (9, 40). Therefore, His kinases are supposed to be dimeric in the functional state, but a higher oligomeric state has not been tested and is conceivable. Only a limited number of membrane-bound sensor kinases have been studied for their oligomerization in their membrane-bound state. Thus, the oligomeric state of the KdpD and TorS sensor kinases of E. coli have been shown to prevail in the detergent-solubilized state as oligomers, presumably dimers (14, 29). There was indirect information that functional DcuS is a dimer as well. Purified DcuS shows kinase activity only after reconstitution into liposomes, and phosphorylation is stimulated by C 4 -dicarboxylates (16,19). Detergentsolubilized DcuS, on the other hand, shows no kinase activity,
A number of regulatory circuits in biological systems function through the exchange of phosphoryl groups from one protein to another. Spo0F and Spo0B are components of a phosphorelay that control sporulation in the bacterium Bacillus subtilis through the exchange of a phosphoryl group. Using beryllofluoride as a mimic for phosphorylation, we trapped the interaction of the phosphorylated Spo0F with Spo0B in the crystal lattice. The transition state of phosphoryl transfer continues to be a highly debated issue, as to whether it is associative or dissociative in nature. The geometry of Spo0F binding to Spo0B favors an associative mechanism for phosphoryl transfer. In order to visualize the autophosphorylation of the histidine kinase, KinA, and the subsequent phosphoryl transfer to Spo0F, we generated in silico models representing these reaction steps.Bacteria use two-component systems to monitor the environment and adapt to new challenges (14, 30). When conditions for growth become unfavorable, Bacillus subtilis forms spores. The initiation of sporulation is controlled by an expanded version of the two-component system called a phosphorelay (6), consisting of four main components: a histidine kinase (KinA), a secondary messenger (Spo0F), a phosphotransferase (Spo0B), and a transcription factor (Spo0A) (Fig. 1). In addition to KinA, four other histidine kinases are known to be involved in sporulation, albeit with lower levels of signal input into the phosphorelay (15). The activities of kinases are modulated by variety of specific signals, but the nature of the signals is unknown. The activation of the signaling pathway involves four phosphotransfer reactions, and the first one is the autophosphorylation of a conserved histidine residue in the kinase, which is dependent upon the conversion of a bound ATP to ADP. The kinase then transfers the phosphoryl group to an aspartate on Spo0F, which transfers it to a histidine residue on Spo0B. Subsequently Spo0B transfers it to an aspartate on Spo0A. Therefore, the order of the phosphoryl flow is ATP3His3Asp3His3Asp (Fig. 1) (13). The initiation of sporulation is dictated by the degree of phosphorylation of the transcription factor Spo0A (37).We have been involved in an effort to explore the mechanism of phosphoryl transfer through the structural characterization of the components of the phosphorelay. We determined the crystal structures of Spo0F in the metal-bound and metal-free states (20,21,29). Other investigators have studied the solution structure of Spo0F by nuclear magnetic resonance techniques in the unliganded state (9) and in complex with beryllofluoride (BeF 3 Ϫ ) (10). Spo0F is a single-domain protein like CheY. It is made up of a central -sheet surrounded by five ␣-helices. The site of phosphorylation, Asp54, is situated in a shallow pocket on the top of the -sheet. Crystallographic analysis of Spo0B showed that it is homodimer with a twofold symmetry (40). The monomer consists of an N-terminal helical hairpin and a C-terminal domain. The helical hairpins as...
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