Neural mechanisms mediating the transition from acute to chronic pain remain largely unknown. In a longitudinal brain imaging study, we followed patients with a single subacute back pain (SBP) episode for over one year as their pain subsided (SBPr), or persisted (SBPp) representing a transition to chronic pain. We discovered brain white-matter structural abnormalities (in n=24 SBP; SBPp=12 and SBPr=12), as measured by diffusion tensor imaging (DTI), at entry into the study in SBPp in comparison to SBPr. These white matter fractional anisotropy (FA) differences accurately predicted pain persistence over the next year, which was validated in a second cohort (in n=22 SBP; SBPp=11 and SBPr=11), and showed no further alterations over a one-year period. Tractography analysis indicated that abnormal regional FA was linked to differential structural connectivity to medial vs. lateral prefrontal cortex. Local FA was correlated to functional connectivity between medial prefrontal cortex and nucleus accumbens in SBPr. As we have earlier shown that the latter functional connectivity accurately predicts transition to chronic pain, we can conclude that brain structural differences, most likely existing prior to the back pain inciting event and independent of the back pain, predisposes subjects to pain chronification.