2013
DOI: 10.3791/4160
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Small and Wide Angle X-Ray Scattering Studies of Biological Macromolecules in Solution

Abstract: In this paper, Small and Wide Angle X-ray Scattering (SWAXS) analysis of macromolecules is demonstrated through experimentation. SWAXS is a technique where X-rays are elastically scattered by an inhomogeneous sample in the nm-range at small angles (typically 0.1 -5°) and wide angles (typically > 5°). This technique provides information about the shape, size, and distribution of macromolecules, characteristic distances of partially ordered materials, pore sizes, and surface-to-volume ratio. Small Angle X-ray Sc… Show more

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Cited by 5 publications
(3 citation statements)
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“…The purification and analysis of lncRNAs poses a significant challenge for analyses of lncRNA structure, particularly if one wants to preserve the native, structural elements mediating function: Folding of long RNAs in vivo in many cases is not merely based on thermodynamic properties of the RNA, but requires the function of endogenous factors or RNA chaperones, which are not usually present in in vitro approaches. [ 46–48 ] Additionally, many RNA purification methods involve heat denaturation and refolding, which can result in misfolding and aggregation of lncRNAs. [ 49,50 ] Therefore, several different approaches that avoid RNA denaturation have been developed to overcome these issues in recent years.…”
Section: Methods For Structure Determination Of Lncrnasmentioning
confidence: 99%
“…The purification and analysis of lncRNAs poses a significant challenge for analyses of lncRNA structure, particularly if one wants to preserve the native, structural elements mediating function: Folding of long RNAs in vivo in many cases is not merely based on thermodynamic properties of the RNA, but requires the function of endogenous factors or RNA chaperones, which are not usually present in in vitro approaches. [ 46–48 ] Additionally, many RNA purification methods involve heat denaturation and refolding, which can result in misfolding and aggregation of lncRNAs. [ 49,50 ] Therefore, several different approaches that avoid RNA denaturation have been developed to overcome these issues in recent years.…”
Section: Methods For Structure Determination Of Lncrnasmentioning
confidence: 99%
“…All SAXS data were processed using ATSAS suite 59 60 . The integration, scaling, and buffer subtraction were accomplished using the PRIMUS program 29 33 59 60 61 62 . The resultant curves were used for all further calculations and reconstructions.…”
Section: Methodsmentioning
confidence: 99%
“…Therefore, alternative techniques are needed that are more commonly available at our disposal. Small-angle X-ray scattering (SAXS) is a powerful characterization technique in which a sample is exposed to X-rays at a small angle (typically 0.1−5°), 68 and the resulting diffraction is measured and analyzed to give insight regarding the size, shape, and overall organization of the sample, in this case, DNA nanostructures. SAXS is able to deliver structural information for molecules ranging between 1 and 200 nm in size, which is a common dimension for DNA constructs.…”
Section: ■ Characterization Of Dna Nanostructuresmentioning
confidence: 99%