• The circadian system was experimentally bifurcated into two days and nights per 24 h.• Pavlovian fear conditioning was used to quantify acquisition and retrieval of memory.• Retrieval of cued fear remained intact in bifurcated, but not phase-shifted, mice. a b s t r a c t a r t i c l e i n f o In mammals, memory acquisition and retrieval can be affected by time of day, as well as by manipulations of the light/dark cycle. Under bifurcation, a manipulation of circadian waveform, two subjective days and nights are experimentally induced in rodents. We examined the effect of bifurcation on Pavlovian fear conditioning, a prominent model of learning and memory. Here we demonstrate that bifurcation of the circadian waveform produces a small deficit in acquisition, but not on retrieval of fear memory. In contrast, repeated phase-shifting in a simulated jet-lag protocol impairs retrieval of memory for cued fear. The results have implications for those attempting to adjust to shift-work or other challenging schedules.