2011
DOI: 10.1177/1947601911436200
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Size Matters: Sequential Mutations in Tumorigenesis May Reflect the Stochastic Effect of Mutagen Target Sizes

Abstract: We tallied the number of possible mutant amino acids in proteins thought to be inactivated early in tumorigenesis and in proteins thought to be inactivated late in tumorigenesis, respectively. Proteins thought to be inactivated early in tumorigenesis, on average, have a greater number of alternative, mutant possibilities, which raises the possibility that the sequential order of mutations associated with cancer development reflects the random chance, throughout life, of a mutagen inactivating a larger versus a… Show more

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Cited by 15 publications
(12 citation statements)
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“…However, there is little biochemical, mechanistic distinction between classical tumor suppressor and metastasis suppressor proteins [3], and thus, for the purpose of applying the functional degeneracy principle, the tumor suppressor set used here includes both types of coding regions. (For further details on the establishment of the above, five coding regions sets, see Methods .…”
Section: Resultsmentioning
confidence: 99%
“…However, there is little biochemical, mechanistic distinction between classical tumor suppressor and metastasis suppressor proteins [3], and thus, for the purpose of applying the functional degeneracy principle, the tumor suppressor set used here includes both types of coding regions. (For further details on the establishment of the above, five coding regions sets, see Methods .…”
Section: Resultsmentioning
confidence: 99%
“…Gene size matters for cancer disease as abnormal cells multiply [54], [55]; which is reflected by size of Nyquist curve. According to the shape of curve, the cancerous genes are divided into two groups i.e.…”
Section: A Nyquist Analysismentioning
confidence: 99%
“…The oncoprotein and tumor suppressor sets have been previously described. 31,35,36 Barcodes having 4 or more oncoprotein coding region mutations were considered to be high oncoprotein coding region mutation barcodes and served as the experimental group. Barcodes having no known oncoprotein coding region mutations, based on the above referenced oncoprotein set, were sorted randomly using a random number generator function and grouped into 3 sets (SET 1-3) to serve as control groups ("SOM STAD, apoptosis").…”
Section: Methodsmentioning
confidence: 99%
“…The chromosome number, start position, reference allele and tumor sequence allele data were collected for the oncoprotein and tumor suppressor coding region sets 31,35,36 for each clinical outcome group. The data was then copied into PROVEAN under the "Human Genome Variants" protocol.…”
Section: Deleterious Amino Acid Changes: Proveanmentioning
confidence: 99%