We used flow cytometry to examine seasonal variations in basin-scale distributions of bacterioplankton in Lake Biwa, Japan, a large mesotrophic freshwater lake with an oxygenated hypolimnion. The bacterial communities were divided into three subgroups: bacteria with very high nucleic acid contents (VHNA bacteria), bacteria with high nucleic acid contents (HNA bacteria), and bacteria with low nucleic acid contents (LNA bacteria). During the thermal stratification period, the relative abundance of VHNA bacteria (%VHNA) increased with depth, while the reverse trend was evident for LNA bacteria. Seasonally, the %VHNA was strongly positively correlated (r ؍ 0.87; P < 0.001) with the concentration of dissolved inorganic phosphorus, but not with the concentration of chlorophyll a. The growth of VHNA bacteria was significantly enhanced by addition of phosphate or phosphate plus glucose but not by addition of glucose alone. Although the growth of VHNA and HNA bacteria generally exceeded that of LNA bacteria, our data also revealed that LNA bacteria grew faster than and were grazed as fast as VHNA bacteria in late August, when nutrient limitation was presumably severe. Based on these results, we hypothesize that in severely P-limited environments such as Lake Biwa, P limitation exerts more severe constraints on the growth of bacterial groups with higher nucleic acid contents, which allows LNA bacteria to be competitive and become an important component of the microbial loop.In pelagic ecosystems, heterotrophic bacteria comprise the most important trophic level for processing dissolved organic matter (DOM) and consume a substantial fraction (40 to 60%) of the primary production (1, 6, 7, 31). Generally, previous studies have treated bulk bacterial communities as a homogeneous pool (1, 6, 7, 31), even though they consist of diverse subgroups that differ in metabolic state (14), DOM use (9), growth rate (10, 46), susceptibility to grazing (17), and phylogenetic affiliations (15). One of the contemporary challenges for aquatic microbial ecology is to clarify variations and regulation of different bacterial subgroups in order to facilitate establishing ecologically useful functional units with which the internal dynamics of the bacterioplankton "black box" can be better understood.Flow cytometry has become a powerful tool for discriminating bacterial subgroups based on cellular nucleic acid content (13,26,37). Recent studies using flow sorting have revealed that bacteria with high nucleic acid contents (HNA bacteria) and bacteria with low nucleic acid contents (LNA bacteria) differ in phylogenetic composition (49), although Servais et al. (36) found that common phylotypes are present in both subgroups. Some investigators have suggested that HNA and LNA bacteria represent active and less active components, respectively (14, 22), leading to the proposition that the percentage of HNA bacteria relative to the total bacterial abundance (%HNA) can be an indicator of the fraction of active cells in bacterial communities (14,19). ...