We have studied the structure of the totally delipidated polypeptide (apolipoprotein B [apo B]) present in low-density serum lipoprotein in detergent (n-dodecyl octaethyleneglycol monoether) solution by electron microscopy . The protein-detergent complex appears as a rodshaped particle, 75-80 nm long and 4.5-5.5 nm wide. The volume of this particle is consistent with the previously published composition reported by Watt and Reynolds (1980, Biochemistry 19:1593-1598 of two copies of apo B and five to six equivalent micelles of detergent . The asymmetric particle possesses a high degree of flexibility and a strong tendency to self-associate in an orderly fashion . The extent of this association is pH dependent .The main vehicle for plasma cholesterol transport is low-density lipoprotein (LDL), a quasi spherical particle 20-23 nm in diameter. The major subspecies of LDL in human plasma is LDL,, defined as a relatively homogeneous population of particles having a hydrated density of 1 .02-1 .063 g/cma. Numerous studies ofholo-LDL, have suggested that it is composed of a hydrophobic core of triglycerides and cholesteryl esters that are rendered water soluble by an as yet undefined "packaging" property of the protein (apolipoprotein B [apo B]) and associated phospholipids. Nuclear magnetic resonance studies have demonstrated that all phospholipid head groups are accessible to the aqueous milieu (23).Data from numerous laboratories have shown an invariant mass (510,000 daltons) of apo B in all LDL and very lowdensity lipoprotein (VLDL) particles (for a review, see reference 19). Empirical estimates of the polypeptide chain molecular weight by SDS gel electrophoresis (7,11,14) and chemical cleavage (2), have been reported and yield conflicting results. However, the molecular weight in concentrated solutions of guanidinium chloride has been determined by sedimentation equilibrium (a rigorous thermodynamic technique) in two laboratories and found to be 255,000 daltons (13, 17) . Therefore, LDL, must contain two copies of apo B per particle (dimeric) .Both ionic and nonionic detergents have been used to study the protein component of holo-LDL, (6,8,14,16,21). Inves-THE JOURNAL OF CELL BIOLOGY " VOLUME 87 DECEMBER 1980 555-561 ©The Rockefeller University Press " 0021-9525/80/12/0555/07 $1 .00 tigation of the properties of apo B (5, 12) in the presence of bound detergent (such as SDS, Triton X-100, and n-dodecyl octaethyleneglycol monoether [C12E8]) indicates that the dimeric form (8,16,21) ofthis protein is retained when all native lipids are removed. Additionally, the nonionic detergent, C12E8, maintains the secondary structure of apo B as assessed by circular dichroism (21).Unlike holo-LDL,, apo B in this detergent appears to be highly asymmetric with a frictional ration (f/fm r1.dm,ed 1) of 2.0-2.3. Hydrodynamic studies with spherical or nearly spherical globular proteins characteristically give frictional ratios between 1 .0 and 1 .3. Because f/fm; (1,yarated) is a measure of both the deviation of a particle f...