The single-photon excitation and transmission spectra of strong-coupling hybrid optomechanics are theoretically analyzed, where a two-level system (TLS) is coupled to a mechanical resonator (MR), generating Jaynes-Cummings-type polariton doublets. In this model, both the optomechanical coupling and the TLS-MR coupling are strong. In this parameter region, polaron-assisted excitation reemission processes can strongly affect the single-photon excitation and output spectra of the cavity. It is found that the fine structure around each sideband can be used to characterize the TLS-MR and the effective TLS-photon couplings, even at the single-quantum level. Thus, the spectrum structures may make it possible to sensitively probe the quantum nature of a macroscopic mechanical element. A possible approach for tomographic reconstruction of the state of a TLS, utilizing the single-photon transmission spectra, is further provided.