A DNA sequence has been obtained for a 35.6-kb genomic segment from Heliobacillus mobilis that contains a major cluster of photosynthesis genes. A total of 30 ORFs were identified, 20 of which encode enzymes for bacteriochlorophyll and carotenoid biosynthesis, reaction-center (RC) apoprotein, and cytochromes for cyclic electron transport. Donor side electron-transfer components to the RC include a putative RC-associated cytochrome c 553 and a unique four-large-subunit cytochrome bc complex consisting of Rieske Fe-S protein (encoded by petC), cytochrome b 6 (petB), subunit IV (petD), and a diheme cytochrome c (petX). Phylogenetic analysis of various photosynthesis gene products indicates a consistent grouping of oxygenic lineages that are distinct and descendent from anoxygenic lineages. In addition, H. mobilis was placed as the closest relative to cyanobacteria, which form a monophyletic origin to chloroplast-based photosynthetic lineages. The consensus of the photosynthesis gene trees also indicates that purple bacteria are the earliest emerging photosynthetic lineage. Our analysis also indicates that an ancient gene-duplication event giving rise to the paralogous bchI and bchD genes predates the divergence of all photosynthetic groups. In addition, our analysis of gene duplication of the photosystem I and photosystem II core polypeptides supports a ''heterologous fusion model'' for the origin and evolution of oxygenic photosynthesis.Bacterial photosynthesis is found in five eubacterial phyla: cyanobacteria, purple bacteria, heliobacteria, green sulfur bacteria, and green nonsulfur bacteria. Analysis of photosystems from purple and green nonsulfur bacteria shows that these organisms synthesize primitive photosystems that are ancestral to the more complex oxygen-evolving photosystem II (PSII) from cyanobacteria and chloroplasts (1). Additional studies of heliobacteria and green sulfur bacteria indicate that they synthesize photosystems that are ancestral to the photosystem I (PSI) complex from cyanobacteria and chloroplasts (2).With the exception of the sequence analysis of PSI and PSII structural polypeptides, there is little information on the origin and evolution of photosynthesis. Complete sequence information on photosynthesis genes is only available for the purple nonsulfur bacterium, Rhodobacter capsulatus, which has a major clustering of photosynthesis genes (3), and for the cyanobacterium Synechocystis sp. PCC 6803, for which sequence analysis has been completed for the entire chromosome. Information on photosynthesis genes from the three other eubacterial photosynthetic phyla is limited mainly to the reaction-center (RC) core polypeptides and a few cytochromes.With the aim of providing more substantive information on the evolution of photosynthesis, we have undertaken an extensive characterization of photosynthesis genes from Heliobacillus mobilis. A gene cluster was found to encode enzymes for bacteriochlorophyll and carotenoid biosynthesis, as well as the RC core polypeptide and cytochromes i...