The article proposes a method of using identification in automated systems that provide identification of elements of various complex systems that are in variable conditions. The existing methods do not take into account the set of variable conditions that affect the characteristics of the identified elements of a complex system, while reducing the number of favorable outcomes in the process of identifying elements in the composition of electronic means. The proposed method makes it possible to increase the reliability of identification of elements of a complex system that are in various variable conditions by creating standards and implementations that correspond to the conditions in which the identified elements of a complex system are located. A formalized algorithm for implementing the methodology is presented. The distinctive features of the developed method are the automatic determination of the reliability of recognition of elements of a complex system in non-stationary conditions.