Cyclin A contains a region implicated in binding to the p27 inhibitor and to substrates. There is strong evolutionary conservation of surface residues contributing to this region in many cyclins, including yeast B-type cyclins, despite the absence of a yeast p27 homolog. The yeast S-phase B-type cyclin Clb5p interacted with mammalian p27 in a two-hybrid assay. This interaction was disrupted by mutations designed to disrupt hydrophobic interactions (hpm mutation) or hydrogen bonding (Q241A mutation) based on the cyclin A-p27 crystal structure. In contrast, mutation of the Clb5p p27-binding domain only slightly reduced binding and inhibition by the Sic1p Clb-Cdc28p kinase inhibitor. Mutations disrupting the p27-binding domain strongly reduced Clb5p biological activity in diverse assays without reducing Clb5p-associated kinase activity. An analogous hpm mutation in the mitotic cyclin Clb2p reduced mitotic function, but in some assays this mutation increased the ability of Clb2p to perform functions normally restricted to Clb5p. These results support the idea of a modular, structurally conserved cyclin domain involved in substrate targeting.Cyclin-dependent kinases (Cdks) drive key events in the eukaryotic cell cycle. Most eukaryotes contain multiple cyclin genes, expressed at different times in the cell cycle and appearing to control distinct cell cycle events. It has been proposed that simple oscillation of a single generic Cdk activity could account for cell cycle regulation (23,35). However, recent observations (reviewed in reference 25) suggest that such models do not take into account strong differences in the efficiency with which different cyclins carry out different biological roles (for example, see references 8, 13, and 18). The molecular basis for such cyclin specificity remains unclear. We proposed recently that a candidate substrate "docking" site characterized in cyclin A (5, 29) might be evolutionarily conserved in many cyclins (8). Here we show that this docking site is functionally conserved in the yeast B-type cyclin Clb5p, both for the ability to bind specific proteins (the mammalian inhibitors p21 and p27) and for biological function in a range of assays presumably requiring interaction with diverse Clb5p substrates. These findings suggest that evolution of this region on the cyclin surface occurred during primordial eukaryotic evolution (predating the separation of yeast and metazoans) and probably arose as a substrate-binding domain rather than as a domain for binding inhibitors. In eukaryotic systems with multiple cyclins due to gene duplication, this region could then diverge to give different binding specificity to different cyclins, resulting in sharp differences in the biological efficiency of driving specific cell cycle events.
MATERIALS AND METHODSYeast strains. A clb3,4,5,6 GAL::CLB5 strain in the W303 background (K3418 [31]; provided by K. Nasmyth) was converted to ura3 by selecting hisG-URA3-hisG popouts on 5-fluoroorotic acid (5-FOA), to make K3418-1. ϫ1924, a diploid clb3,4,5,6 pGA...