Influenza A virus is being extensively studied because of its major impact on human and animal health. However, the dynamics of influenza virus infection and the cell types infected in vivo are poorly understood. These characteristics are challenging to determine, partly because there is no efficient replication-competent virus expressing an easily traceable reporter gene. Here, we report the generation of a recombinant influenza virus carrying a GFP reporter gene in the NS segment (NS1-GFP virus). Although attenuated when compared with wild-type virus, the NS1-GFP virus replicates efficiently in murine lungs and shows pathogenicity in mice. Using whole-organ imaging and flow cytometry, we have tracked the dynamics of influenza virus infection progression in mice. Imaging of murine lungs shows that infection starts in the respiratory tract in areas close to large conducting airways and later spreads to deeper sections of the lungs. In addition to epithelial cells, we found GFP-positive antigen-presenting cells, such as CD11b + CD11c , as early as 24 h after intranasal infection. In addition, a significant proportion of NK and B cells were GFP positive, suggesting active infection of these cells. We next tested the effects of the influenza virus inhibitors oseltamivir and amantadine on the kinetics of in vivo infection progression. Treatment with oseltamivir dramatically reduced influenza infection in all cell types, whereas, surprisingly, amantadine treatment more efficiently blocked infection in B and NK cells. Our results demonstrate high levels of immune cells harboring influenza virus antigen during viral infection and cell-typespecific effects upon treatment with antiviral agents, opening additional avenues of research in the influenza virus field.antivirals | pathogenesis | recombinant influenza virus | GFP virus | cell tropism I nfluenza A virus (IAV), a member of the Orthomyxoviridae family, causes respiratory disease that can be very severe, especially in very young children and elderly individuals (1). Apart from yearly seasonal outbreaks, IAV can cause frequent epidemics and occasional pandemics in humans (2, 3). Vaccination has been one of the most effective means of protection against influenza virus infection. In addition, there are two categories of Food and Drug Administration-approved drugs used for treatment of IAV infections: (i) M2 inhibitors, which block viral uncoating and entry (amantadine and rimantadine); and (ii) NA inhibitors, which block viral spreading (oseltamivir and zanamivir; reviewed in refs. 4-7).Although studies on IAV using animal models and tissue culture have provided tremendous knowledge about both the viral and host factors that determine pathogenesis, following viral infection in vivo may provide us with a more complete picture of the complex interactions between the virus and the host (8). Such in vivo studies have been hampered primarily due to the lack of fully virulent IAV-expressing reporter genes that can be easily detected in vivo. Previous studies have attempted ...