ShinyDiversity - Understanding Alpha and Beta Diversity through Interactive Visualizations

Leung, Eric T.; Noronha, Roshan; Mirza, Ali; Shenwai, Reva; Mpatziakas, Asterios

doi:10.12688/f1000research.14217.1

Cited by 1 publication

(1 citation statement)

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“…Bacterial diversity between the sites was estimated based on alpha and beta diversity indexes [23,24]. All of the analyses were performed with the vegan package [25] in R 3.6.3 [26].…”

Section: Bacterial Diversitymentioning

confidence: 99%

The Isolation of Culturable Bacteria in Ixodes ricinus Ticks of a Belgian Peri-Urban Forest Uncovers Opportunistic Bacteria Potentially Important for Public Health

Rousseau

Vanwambeke

Boland

et al. 2021

IJERPH

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Most bacteria found in ticks are not pathogenic to humans but coexist as endosymbionts and may have effects on tick fitness and pathogen transmission. In this study, we cultured and isolated 78 bacteria from 954 Ixodes ricinus ticks collected in 7 sites of a Belgian peri-urban forest. Most isolated species were non-pathogenic environmental microorganisms, and were from the Firmicutes (69.23%), Actinobacteria (17.95%) and Proteobacteria (3.84%) phyla. One bacterium isolate was particularly noteworthy, Cedecea davisae, a rare opportunistic bacterium, naturally resistant to various antibiotics. It has never been isolated from ticks before and this isolated strain was resistant to ampicillin, cefoxitin and colistin. Although cultivable bacteria do not represent the complete tick microbiota, the sites presented variable bacterial compositions and diversities. This study is a first attempt to describe the culturable microbiota of ticks collected in Belgium. Further collections and analyses of ticks of different species, from various areas and using other bacterial identification methods would strengthen these results. However, they highlight the importance of ticks as potential sentinel for opportunistic bacteria of public health importance.

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“…Bacterial diversity between the sites was estimated based on alpha and beta diversity indexes [23,24]. All of the analyses were performed with the vegan package [25] in R 3.6.3 [26].…”

Section: Bacterial Diversitymentioning

confidence: 99%