Activities in living cells are performed by protein conformational dynamics which in turn are governed by quantum mechanical van der Waals London forces in intra-protein "hydrophobic" pockets. In assemblies of proteins with periodic lattice geometry such as cytoskeletal actin and microtubules (as well as ordered water on their surfaces), Bose-Einstein condensation, quantum coherent superposition and quantum computation with entanglement may occur as a collective effect of these forces due to metabolic coherent phonon pumping. Decoherence can be avoided through isolation/shielding by actin gelation, Debye layer screening and water/ion ordering and topological quantum error correction. As an example, quantum spin transfer through organic molecules is more efficient at higher temperatures than at absolute zero. The unitary oneness and ineffability of living systems may depend on mesoscopic/macroscopic quantum states in protoplasm.Keywords: Bose Einstein condensation, cytoskeleton, decoherence, evolution, life, London forces, microtubules, protein conformation, quantum coherence, quantum superposition
OIL VERSUS WATER: HYDROPHOBIC POCKETS IN PROTEINSAll chemistry including biochemistry is based on quantum interactions, so living systems-like non-living systemsdepend on quantum states at the level of chemical bonds. However the unitary oneness and ineffability of living systems have suggested that higher level quantum properties such as Bose-Einstein condensation, quantum coherent superposition and entanglement may operate in biology.1-3 But quantum effects are apparently washed out at scales larger than individual atoms or sub-atomic particles, at warm temperatures, and in aqueous media. Thus the possibility of quantum states playing functional roles at mesoscopic or macroscopic scales in "warm, wet and noisy" biological systems seems unlikely due to environmental decoherence. On the other hand evolution may have solved the decoherence problem so that mesoscopic/macroscopic quantum states are essential features of biological systems. 4 Living cells are 80% water, and many polar, water soluble biomolecules play key roles in cell function. However there are also extensive non-polar "oily" regions in living cells which exclude water. These are called hydrophobic regions, and they occur within proteins 5 , lipid membranes and nucleic acids (e.g. the "pi stack" of DNA). If organized quantum states exist in cells they are presumably integrated among hydrophobic regions of various cellular components and organelles. However here we consider only proteins and geometric arrays of proteins (i.e. protein assemblies) in cytoplasm, the bulk protoplasm between cell membrane and nucleus.Proteins are folded chains of amino acids strung together by peptide bonds (Figure 1, top). Each of the twenty different amino acids which comprise proteins have distinct side groups with varying degrees of polarity and water solubility. Amino acids with side groups (or "residues") which are non-polar and insoluble in water ("hydrophobic...