The cholecystokinin gene (CCK) is thought to play a role in the pathogenesis of both panic disorder 1-4 and schizophrenia. 5 In this study, we have extended the 5Ј-upstream sequence of the CCK gene, and identified a compound short tandem repeat (STR), located approximately −2.2 to −1.8 kb from the cap site. This STR was found to be polymorphic with ten different allele lengths. Case-control studies using 73 panic patients, 305 schizophrenics and 252 controls showed a significant allelic association with panic disorder (P = 0.025), but not with schizophrenia. Dividing the STR alleles into three classes according to length, Long (L), Medium (M) and Short (S), produced strong genotypic (MM) (nominal P = 0.0014) and allelic (M) (nominal P = 0.0079) associations with panic disorder. Screening the newly extended promoter region detected not only the previously identified −36CϾT and −188AϾG single nucleotide polymorphisms (SNPs) but a new rare SNP, −345GϾC. Neither of the former two SNPs showed significant association with either panic disorder or schizophrenia. Haplotypic distributions of the STR and SNPs −188 and −36 were significantly different between panic samples and controls (P = 0.0003). These findings suggest that the novel STR or a nearby variant may confer susceptibility to the development of panic disorder. Molecular Psychiatry (2001) 6, 465-470. Panic disorder is a common and genetically complex mental illness, characterized by recurrent and unexpected panic attacks. It exhibits a lifetime prevalence rate of between 1.2/100 to 2.4/100 in the general population. 6 Family studies have consistently shown a higher prevalence ranging from between 7.7% to 20.5% in first-degree relatives of probands. 6 Twin studies have shown concordance rates of 25% for MZ twins and 10% for DZ twins, 7 suggesting a genetic component in the development of this disease.The carboxy terminal tetrapeptide of CCK (CCK-4), expressed in the brain, is thought to act as a neurotransmitter and/or neuromodulator. It provokes panic attacks in subjects with panic disorder and normal controls, 1,2 with panic disorder patients having a higher sensitivity to CCK-4 than controls. 3 The panicogenic effect of CCK-4 is inhibited by antagonists of the CCK B receptor 4 which constitutes a large proportion of the CCK receptors in the human brain. 8 These findings have intensified research into elucidating the role of CCK in panic disorder.CCK-like peptides, mainly the carboxy terminal octapeptide of CCK (CCK-8), co-localize with dopamine in mesolimbic dopaminergic neurons. 9 In humans, CCK-8 is reported to have an anti-psychotic effect, 5 inferring a possible role in the pathology of schizophrenia.Two groups simultaneously reported a single nucleotide polymorphism (SNP), −36CϾT in the 5Ј-upstream region of the CCK gene. 10,11 Wang et al 10 showed that the −36T allele was weakly associated with subjects manifesting panic attacks (P Ͻ 0.05) but not with panic disorder. In a case-control study of schizophrenia samples, Bowen et al 11 found no associati...