Arrest of the multiplication of Mycobacterium tuberculosis caused by expression of adaptive immunity in mouse lung was accompanied by a 10-to 20-fold decrease in levels of mRNAs encoding the secreted Ag85 complex and 38-kDa lipoprotein. esat-6 mRNA levels were high throughout infection. The data imply that multiplying and nonreplicating tubercle bacilli have different antigen compositions.The seminal finding that live Mycobacterium tuberculosis elicit protective immunity more effectively than dead bacilli (6, 24) prompted extensive investigation of proteins that tubercle bacilli secrete as potential targets of protective immune responses. Among the best-characterized secreted proteins are the low-molecular-weight ESAT-6 protein (33), the antigen 85 complex (Ag85A, Ag85B, and Ag85C) (42), encoded by the fbpA, fbpB, and fbpC genes, and a 38-kDa glycolipoprotein (17), the product of pstS1. These antigens induce strong immune responses to infection with M. tuberculosis or Mycobacterium bovis, and they elicit protective immunity in animal models of tuberculosis (for a review, see references 1, 4, and 16). Consequently, experimental vaccines based on ESAT-6 and/or the Ag85 complex have been scheduled for clinical trials (18, 23), ESAT-6 has been proposed for immunodiagnosis of tuberculosis (3,10,13,20,26), and the 38-kDa protein is included in all serodiagnostic assays for active tuberculosis developed to date. To extend the usefulness of these proteins as new drug targets, the structures of two members of the Ag85 complex (2, 29) and the 38-kDa antigen (40) have been solved by X-ray crystallography and nuclear magnetic resonance has been used to obtain the structure of the cotranscribed ESAT-6/CFP-10 complex (28). Next we need to understand the production of these target antigens at various stages of human infection.Classic biochemical studies (30) and recent gene manipulation experiments (21) showed that M. tuberculosis changes its metabolic state during infection by utilizing alternative metabolic pathways. We have shown (31) that adaptation of M. tuberculosis to the expression of adaptive immunity in the lungs of infected mice involves changes in the pathogen's transcription program characteristic of the state of nonreplicating persistence (41). In the present work, we characterize a correlation between the growth state of M. tuberculosis and the production of major secreted antigens by measuring levels of M. tuberculosis transcripts encoding the Ag85 complex, ESAT-6, and the 38-kDa lipoprotein during M. tuberculosis infection of the mouse lung. The data support the view that antigen composition differs between multiplying and nonreplicating tubercle bacilli.Infection of C57BL/6 mice and isogenic, gamma interferon knockout (IFN-␥ Ϫ/Ϫ ) mice with ϳ2 ϫ 10 2 CFU of M. tuberculosis strain H 37 Rv (Trudeau Mycobacterial Collection strain no. 102) cultivated to mid-log-growth phase in Proskauer and Beck medium containing 0.01% Tween 80 was carried out as previously described (14, 31). At selected times, lungs were harve...