Sequence patterns and HMM profiles to predict proteome wide zinc finger motifs

Mining proteomes for zinc finger persulfidation

“…Once a ZF is defined, it can then be used to classify newly discovered ZFs. 27,39,40 For example, all ZFs with a CCHH conserved ligand set and a spacing of…”

“…Once a ZF is defined, it can then be used to classify newly discovered ZFs. 27,39,40 For example, all ZFs with a CCHH conserved ligand set and a spacing of [C]-[X] 2–4 -[C]-[X] 12 -[H]-[X] 3–5 -[H] are referred to as ‘classical zinc finger proteins’. 33 Other examples of ZF classifications are shown in Fig.…”