Sequence Organization of a Pea Chloroplast DNA Gene Coding for a 34,500-Dalton Protein

Membrane proteins drive and mediate many essential cellular processes making them a vital section of the proteome. However, the amphipathic nature of these molecules ensures their detailed structural analysis remains challenging. A versatile procedure for effective electrospray-ionization mass spectrometry (ESI-MS) of intact intrinsic membrane proteins purified using reverse-phase chromatography in aqueous formic acid/isopropanol is presented. The spectra of four examples, bacteriorhodopsin and its apoprotein from Halobacterium and the Dl and D2 reaction-center subunits from spinach thylakoids, achieve mass measurements that are within 0.01% of calculated theoretical values. All of the spectra reveal lesser quantities of other molecular species that can usually be equated with covalently modified subpopulations of these proteins. Our analysis of bovine rhodopsin, the first ESI-MS study of a G-protein coupled receptor, yielded a complex spectrum indicative of extensive molecular heterogeneity. The range of masses measured for the native molecule agrees well with the range calculated based upon variable glycosylation and reveals further heterogeneity arising from other covalent modifications. The technique described represents the most precise way to catalogue membrane proteins and their post-translational modifications. Resolution of the components of protein complexes provides insights into native protein/protein interactions. The apparent retention of structure by bacteriorhodopsin during the analysis raises the potential of obtaining tertiary structure information using more developed ESI-MS experiments.

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Electrospray‐ionization mass spectrometry of intact intrinsic membrane proteins

Whitelegge

1998

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Pea chloroplast DNA primase: characterization and role in initiation of replication

1991

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A DNA primase activity was isolated from pea chloroplasts and examined for its role in replication. The DNA primase activity was separated from the majority of the chloroplast RNA polymerase activity by linear salt gradient elution from a DEAE-cellulose column, and the two enzyme activities were separately purified through heparin-Sepharose columns. The primase activity was not inhibited by tagetitoxin, a specific inhibitor of chloroplast RNA polymerase, or by polyclonal antibodies prepared against purified pea chloroplast RNA polymerase, while the RNA polymerase activity was inhibited completely by either tagetitoxin or the polyclonal antibodies. The DNA primase activity was capable of priming DNA replication on single-stranded templates including poly(dT), poly(dC), M13mp19, and M13mp19 + 2.1, which contains the AT-rich pea chloroplast origin of replication. The RNA polymerase fraction was incapable of supporting incorporation of 3H-TTP in in vitro replication reactions using any of these single-stranded DNA templates. Glycerol gradient analysis indicated that the pea chloroplast DNA primase (115-120 kDa) separated from the pea chloroplast DNA polymerase (90 kDa), but is much smaller than chloroplast RNA polymerase. Because of these differences in size, template specificity, sensitivity to inhibitors, and elution characteristics, it is clear that the pea chloroplast DNA primase is an distinct enzyme form RNA polymerase. In vitro replication activity using the DNA primase fraction required all four rNTPs for optimum activity. The chloroplast DNA primase was capable of priming DNA replication activity on any single-stranded M13 template, but shows a strong preference for M13mp19 + 2.1. Primers synthesized using M13mp19 + 2.1 are resistant to DNase I, and range in size from 4 to about 60 nucleotides.

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Accumulation of photosynthesis gene transcripts in response to sodium chloride by salt-tolerant alfalfa cells

Winicov

Button

1991

Planta

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A cell line from diploid alfalfa (Medicago sativa L.), HG2-N1, which is stably tolerant to 1% (0.171 M) NaCl in the medium and noticeably more green than the parent line (HG2), was investigated to determine if increased chlorophyll accumulation was related to chloroplast development toward greater photosynthetic activity and increases in chloroplast-gene expression in this cell line. The ctDNA (chloroplast-DNA) copy number in HG2-N1 was found to be increased by 50% from that of the salt-sensitive parent HG2 line. RNA accumulation, as detected by hybridization to a nuclear actin gene, appeared comparable in HG2 and HG2-N1. In contrast, mRNA levels of the plastid-encoded psbA gene were increased in the salt-tolerant HG2-N1 grown on normal medium. The mRNA levels of HG2-N1 were further increased in response to added NaCl in the medium. The mRNA levels from other chloroplast genes necessary for photosynthesis (psbD, psaB, atpB, rbcL), as well as from several nuclear genes (pCab4, pCab1, rbcS) encoding polypeptides participating in photosynthesis, also increased in the salt-tolerant HG2-N1 when it was grown in the presence of NaCl whereas actin-mRNA and chloroplast-rRNA levels remained comparable under growth conditions ± NaCl. Several independently isolated salt-tolerant cell lines showed a similar response to salt, as monitored by accumulation of rbcL mRNA, indicating that transcript accumulation for photosynthesis genes is correlated with the salt response in these salt-tolerant alfalfa cell lines.

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Sequence Organization of a Pea Chloroplast DNA Gene Coding for a 34,500-Dalton Protein

Cited by 17 publications

References 31 publications

Electrospray‐ionization mass spectrometry of intact intrinsic membrane proteins

Electrospray‐ionization mass spectrometry of intact intrinsic membrane proteins

Pea chloroplast DNA primase: characterization and role in initiation of replication

Accumulation of photosynthesis gene transcripts in response to sodium chloride by salt-tolerant alfalfa cells

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